Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11950 872 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 845 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 617 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 483 / 8e-153 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G09060 433 / 3e-135 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 189 / 5e-49 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT2G23530 44 / 0.0005 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009700 [exp] 1647 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 669 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G091200 [exp] 665 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.013G019000 [exp] 483 / 8e-154 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 453 / 3e-135 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G027000 [exp] 419 / 2e-132 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 342 / 2e-100 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 308 / 7e-89 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.009G108400 [exp] 45 / 0.0002 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020033 [exp] 943 / 0 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015260 [exp] 626 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 488 / 9e-156 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 484 / 2e-154 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002391 [exp] 428 / 1e-131 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 390 / 5e-118 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 325 / 1e-96 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020084 [exp] 286 / 1e-80 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 282 / 1e-80 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10004602 [exp] 240 / 6e-70 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.004G006200.2 pacid=42796710 polypeptide=Potri.004G006200.2.p locus=Potri.004G006200 ID=Potri.004G006200.2.v4.1 annot-version=v4.1 ATGGCTGCTATGATTGCTAAGTCTCGGATTAATAGGGGTGGTGGTAATAAAATTAGGAGATTTCAAGGAGCTGGTTTGAAGTTTTCATGCCGTGAAACAA GGGAAAGAGTTGAGAAAACCCTGGAAAATAGATTCAATGAGGTGGTAGCATCGAAGGCGAGAAGGAAGACTTCATGTAAGAAAGTGGAGGTAATTCAATT GTCATCAGACAGTGATGATGATGATGATGACTGGTCGCCCCGAAGGAGAAAGAAGGCTTTGAATAGGAAACTGATATTAGCCCCAGAAAGTGATCTTTCA GAGAGTGATCACCAGTGCTCGCCTTCGGAAAGAAGGAAAACTTTGTCTGAGCAGATTAAGGCACCCCCAGAAATTGAATTGTCAAAAACTGATGATGAGC AGTTTCTGGGAGCAAGAAGGAAAGCTTCATATGAGAAAATTAAGGCAGCCTCTGAAATTGAATCGTTGAAAAATGATGATCAGTGGTGTTCAGGAACAAG AAGGAAAGCTTCATCTAAGAAAATTAAGGCACCCTCAGAAACTGAATTGTTGAAAAGTGATGATCAACAGTGCATGGGAACAAGAAGGAAAGCTTCATCC AAGAAAATTATGTTAGCTCCAGATGTTGGATTTTCGGAGAGTGATGGTAAGTTGCCTCCAATGAGATTTGAAACCTCATCTAAGAAAATTAAGTCAGTTT CAGAAATTGAGTTGTTGAAGAGTGATGATGAGTGGTCACCGCGAGTGAGGAGAAAATCTTCATCTAAAAAAGTGAAGCCAGTTACGGTATCTGAGTTTTT GCAGAGTAATGTGGTCCCGAAGGGGCAGCAGAGCGGTTTAAACAAGCGTAGTAGAAGTAGTTCTGTAGGTGTAGATTTTGAGGGTGATTCAGAAGAGGAT CTGTTAGAAGCAATTTGTGTTGTAAAAATGAGAGAGCGAAAACGAACTAGGAATTCAGGGAGGGATATAAATGAGAGAAGTCTGAAGGAGGCCAGAGAAA AAAATATAGGTTCTGTGAATTCTTCCTCATCTTCTTCTTCAGCATCAGCTTCTTCTAGCTCATCAGTTTCAAAACGTGATGGTTATTGCAATGGTGTGTC TGCAGTGAGAAATGTGAAGGTCAAAGGACAAGATATCAAAAGATGTCACCAGTGCATGAAAAAAGAAAGAATAGTTGTTGTCCTTTGTAAGAAATGTAAT AGAGTGTACTGCATACAGTGCATCAAGCAATGGTATCCTGAGATGACAGAAGGGCACTTTGCAAAACGATGCCCATTTTGTCGTAAAAAATGCAATTGTA ATGTGTGTTTGCACTCAAGCGGGTTGATTAAGACATCAAAAAGGGATATCACCAACAGTGAAAAGGTTCAGCATCTGCATTATTTGATCAAGTTGCTGCT TCCTTTTCTGGAACAAATCTGTGATGAACAAACTGAAGAAATGCAGATTGAGGCTGGCATTCGAGGTTCCCCTTTTGATATAGCTGAGAACTTTTGCTAC AGTGATGAGCGTGTATATTGCAATCACTGCACCACTTCTATCATCGACTTTCATCGCAGCTGTCCAAATTGTTCTTATGAACTGTGCCTTAGTTGTTGTC GAGAAATTCGTAAGGGAAGCCTTTCAAGACGTGCTGAAAAGAAGTTTTGGTATGTGGATAGAGGCTCTGGTTATATGCATGGTGGAGATCCATTACCTTG TCATTCCCAAAATCCTTATGACCACATTGAGCCTCTAGTTCTATCATGGAATGCCAATGAAGATGGTAGCATTTCTTGCCCTCCAAATGAAATGGGTGGT TGTGGTGATTGTGCATTGGAGCTAAAGCATATCCTTCCGCCAAGACAGGTTGCGGAGTTGAAAAGGAAGGCAGCAGAATTATTGGAAATTTGTGGCACTG AACAGGCAAGTTTGATGTGCAAGTGCAATGAAACAGGGAAAGGACTGTTAAGAAGAGCAGCGTTTAGGGAAGGATCTGAGGACAATTACTTGTATTGTCC TGCCTCAAAGGATATTCTTGAGGATGAAAAACTTTTTCACTTCCAAAAGCACTGGGCTAAAGGTGAGCCAGTTATAGTTCGTGATGTTCTTGAGGAGACA ACTCATTTGAGCTGGGAGCCGATGGTCATGTGGCGTGCACTATGTGAAAATGTGGATTCAGATATTAGTTCAAAGATGTCTGAAGTGAAGGCTATTGATT GTTTGGCATGTTGCGAGGTGGAGATTAATACCCGACAGTTTTTTAAAGGCTATATGGAAGGGAGAACATATCATAACTTTTGGCCTGAGATGCTTAAGCT GAAGGACTGGCCTCCATCAGATAAATTTGAAAACATTTTGCCACGCCATTGTGATGAGTTTATCAGAGCACTGCCATTTCAAGAATACAGTGGTCCAAAT GCTGGAATCCTGAATGTTGCTGCGAAGTTTCCTGAAGAAAAGCTGAAACCAGACTTGGGTCCAAAAACTTATATTGCATATGGTACAAGAGAAGAGCTTG GAAGAGGGGACTCGGTGACCAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACACAAACTGCTGATGTACTATTAAGTGAAGCACAACGCTC TGCCATTGAGCAGTTGAAAATGAAGCACAGGGAACAGGATGAGAAGGAACATTTAGAAAAAGACAAGGTAGACAATCCTCACATTGAACTTGATCAGGGA AATGATAGTTTGAAAGAAGAGAATGATGTCTCAGAAATTAGAGGGCCACAGCCGCACCCCTCTGAAATTAATGAAAAACTAAAGAACTCTGAAGATGTGT TAAGAGGAGCTGCACTTTCTGGTTTACCCTCAGAAGGGGAGACAGCGGACACAGCAGGTGGTGGCGCTTTGTGGGACATTTTCAGGAGGGAGGATGTTCC CAAGTTAGAGGAATATCTTAGAAAGCACTTCAAAGAATTCAGGCACACTTTCTGTGCCCCCGTAGAACAGGTCGATCATCCAATTCATGACCAATGTTTC TATTTAAATTTGGAGCATAAAAGGAAATTGAAGGAGGAATTCGGAGTTGAAGCCTGGACATTTGAACAAAGAGTTGGAGAGGCTGTATTTATACCCGCTG GATGCCCACACCAAGTTAGGAATCTTCAGTCTTGTACTAAAGTTGCTGTAGATTTCGTCTCTCCTGAAAATATAAAGGAATGCCTCCGGTTAACTGAAGA GTTCCGACAACTTCCGATGAACCACAGAGCTAGAGAAGATAAACTTGAGATAAAGAAAATGATAATTTATGCAATTGATAAAGCCATTATTGACTTGCAA GAGCTAATAGAATCCCGGCGATGA
AA sequence Show only first row Show all	>Potri.004G006200.2 pacid=42796710 polypeptide=Potri.004G006200.2.p locus=Potri.004G006200 ID=Potri.004G006200.2.v4.1 annot-version=v4.1 MAAMIAKSRINRGGGNKIRRFQGAGLKFSCRETRERVEKTLENRFNEVVASKARRKTSCKKVEVIQLSSDSDDDDDDWSPRRRKKALNRKLILAPESDLS ESDHQCSPSERRKTLSEQIKAPPEIELSKTDDEQFLGARRKASYEKIKAASEIESLKNDDQWCSGTRRKASSKKIKAPSETELLKSDDQQCMGTRRKASS KKIMLAPDVGFSESDGKLPPMRFETSSKKIKSVSEIELLKSDDEWSPRVRRKSSSKKVKPVTVSEFLQSNVVPKGQQSGLNKRSRSSSVGVDFEGDSEED LLEAICVVKMRERKRTRNSGRDINERSLKEAREKNIGSVNSSSSSSSASASSSSSVSKRDGYCNGVSAVRNVKVKGQDIKRCHQCMKKERIVVVLCKKCN RVYCIQCIKQWYPEMTEGHFAKRCPFCRKKCNCNVCLHSSGLIKTSKRDITNSEKVQHLHYLIKLLLPFLEQICDEQTEEMQIEAGIRGSPFDIAENFCY SDERVYCNHCTTSIIDFHRSCPNCSYELCLSCCREIRKGSLSRRAEKKFWYVDRGSGYMHGGDPLPCHSQNPYDHIEPLVLSWNANEDGSISCPPNEMGG CGDCALELKHILPPRQVAELKRKAAELLEICGTEQASLMCKCNETGKGLLRRAAFREGSEDNYLYCPASKDILEDEKLFHFQKHWAKGEPVIVRDVLEET THLSWEPMVMWRALCENVDSDISSKMSEVKAIDCLACCEVEINTRQFFKGYMEGRTYHNFWPEMLKLKDWPPSDKFENILPRHCDEFIRALPFQEYSGPN AGILNVAAKFPEEKLKPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVNILTQTADVLLSEAQRSAIEQLKMKHREQDEKEHLEKDKVDNPHIELDQG NDSLKEENDVSEIRGPQPHPSEINEKLKNSEDVLRGAALSGLPSEGETADTAGGGALWDIFRREDVPKLEEYLRKHFKEFRHTFCAPVEQVDHPIHDQCF YLNLEHKRKLKEEFGVEAWTFEQRVGEAVFIPAGCPHQVRNLQSCTKVAVDFVSPENIKECLRLTEEFRQLPMNHRAREDKLEIKKMIIYAIDKAIIDLQ ELIESRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	1.41	0.7501
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	7.34	0.7166
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	8.12	0.6978
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	8.48	0.7053	ADR1.1
AT4G27220			NB-ARC domain-containing disea...		Potri.001G429660 [exp]	9.05	0.7500
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432680 [exp]	9.16	0.7433
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	9.48	0.7208
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	13.63	0.6560	Pt-GPA1.2
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	14.14	0.6989
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.001G065600 [exp]	14.69	0.7242

Compare expression of checked genes

Potri.004G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.