Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32580 205 / 8e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 204 / 3e-67 Protein of unknown function (DUF1068) (.1) AT4G04360 194 / 1e-63 Protein of unknown function (DUF1068) (.1) AT2G24290 140 / 2e-42 Protein of unknown function (DUF1068) (.1) AT4G30996 134 / 4e-40 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227100 [exp] 224 / 3e-75 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.014G155600 [exp] 218 / 6e-73 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.005G038000 [exp] 134 / 4e-40 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 121 / 6e-35 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.013G026900 [exp] 121 / 9e-35 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.006G187800 [exp] 119 / 5e-34 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035288 [exp] 219 / 3e-73 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10030034 [exp] 219 / 4e-73 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 197 / 5e-65 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 183 / 2e-59 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 123 / 2e-35 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 120 / 2e-34 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10035349 [exp] 87 / 2e-21 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10029975 [exp] 80 / 1e-18 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [poplar] [flax] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Potri.004G006500.3 pacid=42795754 polypeptide=Potri.004G006500.3.p locus=Potri.004G006500 ID=Potri.004G006500.3.v4.1 annot-version=v4.1 ATGATGAATGAATACTACTACAACAACAGGCGCAGAGGCCCTAAGCTAAAGGCAGCCATAAAGGTGGTGATGGTTATCATAGGATTTTTCCTCGTTGGCT ACATTGTTGGCCGACCTTTGTATTGGCATCTTTCTGAATTTTTAACGGCCAAGATTCGTTCTTCTACCCTTCGTTGCCATCCTTGCTCCTGTGATTGCTC TTCTCAACCCCTCCTTACCCTCCCTGAAGGATTGAGCAACAGCTCCTTTACAGATTGTATGAAGCATGATCCTGAAGTGAGCCATGAGATAGAGAAAAGT TTTACAGATATGTTGTCAGAGGAACTGAGGTTAAATGAAGAAGAAGCTCAGAAAAAACAGCAGCGTGCAGACGTGGCGCTGTTGGAGGCTAAGAGAATGA CATCTCAGTACCAGAAAGAAGCAGAGAAATGCAATTTTGGAATGGATACCTGCGAAGCGGCAAGAGAAAGAGCTGAAGAAGTATTACAAGAACAAAGGAA ACTTAGTGCAACATGGGAGTTTAGGGCTCGCGAGAGAGGATGGAGAGAAGGCCTCATGAGGTCTCAGGTTAATCAAAACTTCGAATAG
AA sequence Show only first row Show all	>Potri.004G006500.3 pacid=42795754 polypeptide=Potri.004G006500.3.p locus=Potri.004G006500 ID=Potri.004G006500.3.v4.1 annot-version=v4.1 MMNEYYYNNRRRGPKLKAAIKVVMVIIGFFLVGYIVGRPLYWHLSEFLTAKIRSSTLRCHPCSCDCSSQPLLTLPEGLSNSSFTDCMKHDPEVSHEIEKS FTDMLSEELRLNEEEAQKKQQRADVALLEAKRMTSQYQKEAEKCNFGMDTCEAARERAEEVLQEQRKLSATWEFRARERGWREGLMRSQVNQNFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	0	1
					Potri.006G062150 [exp]	2.00	0.9459
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	2.44	0.9424
AT3G48950			Pectin lyase-like superfamily ...		Potri.004G073900 [exp]	2.44	0.9305
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	2.82	0.9296
AT3G24060			Plant self-incompatibility pro...		Potri.003G175200 [exp]	3.31	0.9239
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	4.24	0.9133	AKT1.1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.004G000750 [exp]	5.00	0.9347
					Potri.003G104800 [exp]	5.29	0.9375
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.001G436433 [exp]	7.48	0.9301
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	10.95	0.9219

Compare expression of checked genes

Potri.004G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.