Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11930 417 / 6e-149 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) AT4G26860 377 / 2e-133 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020039 [exp] 388 / 1e-136 AT1G11930 372 / 2e-130 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) Lus10015557 [exp] 376 / 2e-133 AT1G11930 361 / 6e-128 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) Lus10032558 [exp] 342 / 1e-119 AT4G26860 387 / 8e-138 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01168 [poplar] [flax] Ala_racemase_N Alanine racemase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G006600.1 pacid=42794919 polypeptide=Potri.004G006600.1.p locus=Potri.004G006600 ID=Potri.004G006600.1.v4.1 annot-version=v4.1 ATGAACAGACAAGAAGAAGAAGAACCCAGCACCACAGATAAGAACTGTACCACAATACAAGAACAAGAGCAAGTCTCTGATATGTCAGCAATACCTGTCG CTATGGACAAAGTCGCAGCGGCGGCGCTCCGATCAGTGCTTCAGCGTGTCTCTCAAGCAGCAGAGAAGGCAGGTCGTGGATCCCAGCAGATCAGAGTGGT GGCTGTTAGTAAGACCAAACCAGTCTCTCTAATCAAACAAGTATACGATGTGGGTCACCGTTGTTTTGGTGAAAACTATGCTCAAGAATTCATAGAAAAG GCACCCCAGTTGCCAGAGGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGTAATAAAGTGAAACCTTTACTGGCTAGTGTACCAAACCTTGATATGG TAGAGAGTGTGGATGATGAAAAGATTGCCAATCATCTTGATCGAGCAGTTGGGAACTTGGGAAGGAAGCCCCTGAAGGTCTTAGTCCAAGTGAATACCAG TGGTGAAGAATCAAAATCTGGTGTTGAGCCCTCAGGTTGTGTGGAACTTGCAAAACATGTTATTCAGAGTTGCACAAACCTTCAGTTTTGTGGCCTAATG ACAATAGGAATGCTTGACTATACCTCAACCCCAGAAAACTTCAAGGCATTGGCAAACTGCAGAAGCGAGGTTTGCAAGGCCCTTGGTATACCAGAAGAGC AATGCGAGCTCTCAATGGGAATGTCTAATGACTTTGAGCAAGCTATTGAAATGGGGAGTACGAATGTGAGAATTGGTTCTACCATATTTGGGCCTAGGGA GTATCCGAAAAAGAAATGA
AA sequence Show only first row Show all	>Potri.004G006600.1 pacid=42794919 polypeptide=Potri.004G006600.1.p locus=Potri.004G006600 ID=Potri.004G006600.1.v4.1 annot-version=v4.1 MNRQEEEEPSTTDKNCTTIQEQEQVSDMSAIPVAMDKVAAAALRSVLQRVSQAAEKAGRGSQQIRVVAVSKTKPVSLIKQVYDVGHRCFGENYAQEFIEK APQLPEDIEWHFIGNLQSNKVKPLLASVPNLDMVESVDDEKIANHLDRAVGNLGRKPLKVLVQVNTSGEESKSGVEPSGCVELAKHVIQSCTNLQFCGLM TIGMLDYTSTPENFKALANCRSEVCKALGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPREYPKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11930			Predicted pyridoxal phosphate-...		Potri.004G006600 [exp]	0	1
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.010G176100 [exp]	3.87	0.9340
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	11.22	0.9066
AT5G57040			Lactoylglutathione lyase / gly...		Potri.018G056200 [exp]	13.22	0.9368
AT5G20130			unknown protein		Potri.016G013500 [exp]	15.49	0.8980
AT5G42770			Maf-like protein (.1.2)		Potri.014G196400 [exp]	16.88	0.8925
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	21.11	0.9343
AT5G15802			unknown protein		Potri.017G099600 [exp]	22.24	0.9266
AT3G44020			thylakoid lumenal P17.1 protei...		Potri.009G155700 [exp]	24.08	0.9299
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Potri.002G072400 [exp]	33.54	0.8990
AT4G01935			unknown protein		Potri.014G117500 [exp]	37.78	0.9088

Compare expression of checked genes

Potri.004G006600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.