Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35735 155 / 6e-45 Auxin-responsive family protein (.1) AT3G25290 147 / 4e-42 Auxin-responsive family protein (.1.2) AT5G47530 145 / 4e-41 Auxin-responsive family protein (.1) AT4G17280 143 / 3e-40 Auxin-responsive family protein (.1) AT4G12980 137 / 2e-38 Auxin-responsive family protein (.1) AT3G07570 112 / 4e-29 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 110 / 4e-28 Auxin-responsive family protein (.1) AT3G61750 102 / 3e-25 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G59070 98 / 2e-23 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G54830 54 / 5e-08 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024700 [exp] 181 / 9e-55 AT5G47530 199 / 7e-60 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 150 / 2e-43 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 150 / 3e-43 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 150 / 5e-43 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 149 / 9e-43 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 149 / 9e-43 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.016G010900 [exp] 149 / 9e-43 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 148 / 4e-42 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 116 / 2e-30 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000915 [exp] 186 / 2e-56 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10021553 [exp] 155 / 1e-46 AT3G25290 165 / 5e-49 Auxin-responsive family protein (.1.2) Lus10025877 [exp] 155 / 7e-46 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 156 / 3e-45 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 156 / 3e-45 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10038225 [exp] 150 / 1e-44 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10002274 [exp] 154 / 2e-44 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10006398 [exp] 150 / 5e-44 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10017564 [exp] 141 / 2e-39 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 133 / 2e-36 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Potri.004G006700.1 pacid=42794126 polypeptide=Potri.004G006700.1.p locus=Potri.004G006700 ID=Potri.004G006700.1.v4.1 annot-version=v4.1 ATGAGCTCTCATTGTCTTGTAATCCTCTGTTTAATCCTGTGTGTCCAAAGCTCTTCATGCAGCGAGGGTTCTCTTGTGACAACAGTGAGAAGAACTAATG AGTGGCAAGTCAGCTCCAGTGTGGAAAACATCAAACCACAAAGGGATGATCATACTTCTCTTCGAGGTACTGAGAATGCAGAGACGACGAACCTAAGATC ATGGAGTGGTCAAATTGCTTTGCATCACAGACGCCATCTTAGGAATACTCATGGGGTTCTAAACATCATAGGATGGGGAACACTCTTGCCAGTGGGGGCG ATTGTTGCAAGATCCTTCAGGAAATTTCCATTGAAATGTGATGAATGGTACAAATTTCACGTTCTGTGTCAAACTTTGGGATATATTATTGGTGCAGTAG GATGGAGCTTTGGGATGTGGCTTGGGAATTCCTCAAAGCAATACAGCTTGAGAGCACACAGGATTCTTGGCATCGTTATTTTCACATTTGCAACTGCACA GATGCTTGCTCTCTACTTGCAACCGAAGAGAGAGAATGAATGCAGGAGGTGGTGGAAGATATACCATAAAATCCTAGGATATCTATTGATTTCCATGATT GTAGCAAACATATTTCAAGGGATTGATCATAAAGACCATGCTGAGAAATGGAAATGGATTTATGTAGGAATACTTTCAGTTTTATCATTTAGTGCTCTAG TGTTGGAGATTCTTCGATTTGTCATGCCTAGAATTCACCGGTAG
AA sequence Show only first row Show all	>Potri.004G006700.1 pacid=42794126 polypeptide=Potri.004G006700.1.p locus=Potri.004G006700 ID=Potri.004G006700.1.v4.1 annot-version=v4.1 MSSHCLVILCLILCVQSSSCSEGSLVTTVRRTNEWQVSSSVENIKPQRDDHTSLRGTENAETTNLRSWSGQIALHHRRHLRNTHGVLNIIGWGTLLPVGA IVARSFRKFPLKCDEWYKFHVLCQTLGYIIGAVGWSFGMWLGNSSKQYSLRAHRILGIVIFTFATAQMLALYLQPKRENECRRWWKIYHKILGYLLISMI VANIFQGIDHKDHAEKWKWIYVGILSVLSFSALVLEILRFVMPRIHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35735			Auxin-responsive family protei...		Potri.004G006700 [exp]	0	1
AT1G67260	TCP	TCP1	TCP family transcription facto...		Potri.017G112000 [exp]	1.73	0.9157
AT5G22580			Stress responsive A/B Barrel D...		Potri.004G187500 [exp]	3.46	0.9254
AT5G22580			Stress responsive A/B Barrel D...		Potri.009G148100 [exp]	6.32	0.9144
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G087500 [exp]	6.92	0.8931
AT3G50180			Plant protein of unknown funct...		Potri.016G040000 [exp]	8.12	0.8516
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G453600 [exp]	8.30	0.8642
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.006G003600 [exp]	9.89	0.8822
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.006G102600 [exp]	11.40	0.8910
AT4G15140			unknown protein		Potri.011G108700 [exp]	12.00	0.8704
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	13.78	0.8699

Compare expression of checked genes

Potri.004G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.