Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22080 490 / 8e-174 RHS14 root hair specific 14 (.1) AT4G22090 479 / 1e-169 Pectin lyase-like superfamily protein (.1) AT1G11920 462 / 4e-163 Pectin lyase-like superfamily protein (.1) AT1G30350 390 / 6e-135 Pectin lyase-like superfamily protein (.1) AT3G27400 374 / 1e-127 Pectin lyase-like superfamily protein (.1) AT3G07010 358 / 2e-121 Pectin lyase-like superfamily protein (.1) AT4G24780 356 / 6e-121 Pectin lyase-like superfamily protein (.1.2) AT1G67750 355 / 1e-120 Pectate lyase family protein (.1) AT4G13710 356 / 4e-120 Pectin lyase-like superfamily protein (.1.2) AT5G63180 352 / 7e-119 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008100 [exp] 636 / 0 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.011G008000 [exp] 528 / 0 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.001G339500 [exp] 369 / 8e-126 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 364 / 5e-124 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 361 / 2e-122 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 357 / 3e-121 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 355 / 4e-120 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G052300 [exp] 339 / 1e-113 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G093400 [exp] 337 / 3e-113 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011258 [exp] 494 / 4e-175 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 481 / 5e-170 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 474 / 4e-167 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 371 / 8e-127 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 371 / 1e-126 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 368 / 1e-125 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 368 / 1e-125 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10036946 [exp] 366 / 9e-125 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 358 / 2e-121 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 357 / 1e-120 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.004G007300.1 pacid=42794734 polypeptide=Potri.004G007300.1.p locus=Potri.004G007300 ID=Potri.004G007300.1.v4.1 annot-version=v4.1 ATGGCCTCGCTAGCTCACGTCCTGTTGCTTTCATGTCTTGCTACATTCTGTGCTTCAACCTTGCAGGGTGATTCACTTAACTACAAGCCTAAAGCCTTAT CAAGCTATCTTCCAAGAAATTATAAGAAAGTCCTGAATACCATAGACTCATGTTGGCGGACGGAGTCCGATTGGGCTACCAATCGTCGTGCTTTGGCCGA TTGTGCTGTGGGATTTGGCCAGGCTGCAATCGGAGGGAAATGTGGGAAAACATACGTTGTCACTACTCCGGATGATGATCCGACAAATCCGAAACCAGGC ACGCTTCGGTATGGTGCTATCCGGACTGAGCCTCTTTGGATCATTTTTGCCAGAGACATGGTTATTACACTCGAAAATGAGCTTATGATAAATAGTTACA AGACTATAGATGGGAGAGGTGCTAACGTCGAGATTACAGGCGGGCCGTGCCTAAAAATTGAATATGTTAGCCATGTTATCATACATGGGATTAGCATTCA TGACTGTAAGCCAGGTAAAAGGGGGCTTGTTAGGAGTAGTCCGACGCACGTTGGTGAACGCCGAGGTGCTGACGGAGATGCCATTGCCATTTCTGCATCG TCTAATATTTGGATTGACCATTGCTATCTCGCTCGCTGCATGGATGGCCTAATTGATGTGATTCATGCTACCACTGCTGTCACTATCTCTAACAACTATT TCACCGAGCATGATAAGGTGATGCTGCTAGGACACAACGATAAATACACTGAGGATCAAGTTATGAAAGTAACAGTCGTCTTCAATCATTTTGGCCCTAA ACTCAATCAAAGAATGCCAAGAGTAAGGTTTGGTTATGCCCACGTTGCCAACAACAGATATGATAAATGGCAAATGTATGCCATTGGCGGCAGTGCTGGT TCAACCATATTCAGTGAAGGGAACTACTTCATTGCTCCTGACATTTCCTATGCCAAAGAGGTTACCAAGAGAGAGGTTTATGGTGGTTGGAAGAATTGGA AGTGGAGGTCCTCCAAGGATGTATTTATGAACGATGCTTATTTTGTCCAATCTGGATATGGAAGGTGTGCACCACGTTATTCCAAAGCTCAGTCCTTCAC AGTTTCTCCAGGAGCTATGGCTCCTGCTTTGACATCTGATGCAGGCCCTTTAAGCTGTGTTGTTGGTGAAGCATGTTGA
AA sequence Show only first row Show all	>Potri.004G007300.1 pacid=42794734 polypeptide=Potri.004G007300.1.p locus=Potri.004G007300 ID=Potri.004G007300.1.v4.1 annot-version=v4.1 MASLAHVLLLSCLATFCASTLQGDSLNYKPKALSSYLPRNYKKVLNTIDSCWRTESDWATNRRALADCAVGFGQAAIGGKCGKTYVVTTPDDDPTNPKPG TLRYGAIRTEPLWIIFARDMVITLENELMINSYKTIDGRGANVEITGGPCLKIEYVSHVIIHGISIHDCKPGKRGLVRSSPTHVGERRGADGDAIAISAS SNIWIDHCYLARCMDGLIDVIHATTAVTISNNYFTEHDKVMLLGHNDKYTEDQVMKVTVVFNHFGPKLNQRMPRVRFGYAHVANNRYDKWQMYAIGGSAG STIFSEGNYFIAPDISYAKEVTKREVYGGWKNWKWRSSKDVFMNDAYFVQSGYGRCAPRYSKAQSFTVSPGAMAPALTSDAGPLSCVVGEAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.004G007300 [exp]	0	1
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.006G005000 [exp]	2.00	1.0000
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.009G048800 [exp]	2.82	0.8836
AT3G02100			UDP-Glycosyltransferase superf...		Potri.010G084900 [exp]	3.16	0.9710
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	3.46	0.8349
AT5G13620			unknown protein		Potri.008G045000 [exp]	4.58	0.8933
AT1G43730			RNA-directed DNA polymerase (r...		Potri.004G000150 [exp]	6.70	0.8188
					Potri.007G009000 [exp]	7.48	0.8274
AT3G30387			Protein of unknown function (D...		Potri.017G039125 [exp]	7.54	0.7313
AT4G35720			Arabidopsis protein of unknown...		Potri.005G103800 [exp]	7.74	0.7216
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.004G154900 [exp]	7.74	0.6568

Compare expression of checked genes

Potri.004G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.