Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11915 360 / 1e-124 unknown protein AT3G17350 100 / 6e-24 unknown protein AT5G50290 79 / 1e-16 unknown protein AT1G10380 74 / 6e-15 Putative membrane lipoprotein (.1) AT1G21230 45 / 7e-05 WAK5 wall associated kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007900 [exp] 525 / 0 AT1G11915 379 / 6e-132 unknown protein Potri.008G099800 [exp] 110 / 9e-28 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 108 / 5e-27 AT3G17350 339 / 4e-117 unknown protein Potri.010G158500 [exp] 103 / 2e-25 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 102 / 5e-25 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 88 / 9e-20 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.015G078700 [exp] 80 / 8e-17 AT5G50290 387 / 4e-136 unknown protein Potri.010G040500 [exp] 72 / 6e-14 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.013G011700 [exp] 47 / 6e-06 AT5G02070 143 / 9e-40 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038443 [exp] 358 / 2e-123 AT1G11915 365 / 2e-126 unknown protein Lus10023362 [exp] 355 / 3e-122 AT1G11915 360 / 2e-124 unknown protein Lus10043098 [exp] 111 / 6e-28 AT3G17350 334 / 7e-115 unknown protein Lus10037078 [exp] 104 / 5e-25 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10001236 [exp] 79 / 1e-16 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 76 / 2e-15 AT5G50290 366 / 9e-128 unknown protein Lus10036687 [exp] 74 / 1e-14 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10036906 [exp] 71 / 4e-14 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037235 [exp] 69 / 4e-13 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10037236 [exp] 59 / 2e-10 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.004G007400.1 pacid=42796258 polypeptide=Potri.004G007400.1.p locus=Potri.004G007400 ID=Potri.004G007400.1.v4.1 annot-version=v4.1 ATGGCTTATAACCCTTCTTCATGTTCTTGTTTTCATCATTCTTTTTGTCTCCTATTCATTATATTCAGTTTTCCATACTTCTTCCTCACAAAAGCTCAAG CTGCAGGCCATTGCAGAACCTCATGTGGAACTATTCCGATAAGCTACCCTTTTGGCATTGATGATGGCTGTGGCAGTCCATATTACAGGCACATACTTGT GTGCTCCGATTCGGGCTTTCTTGAGCTTCGAACGCCTTCCGGGAGATACCAAGTTCGTAGCATAAGCTACTCAGATCCTCACATGATAGTCACTGATCCA TTCATGTGGAGTTGTCAAGATGGTCATCACTTTCGTGCAACTAGGCCATTTAGCCTTGACACAAGCACACATTTAACACTCTCCTCTCAAAATGACTATC TCTTCTTCAATTGTAGCGAAGAGAGGGTGATTGTTCAGCCAAAGCCTATCTTCTGTGAGAGGTTTCCTGATCGGTGCGACTCAACATGTGATAGTGCTAG TTATCTTTGCAGGCACTTGCCAGGATGTGCTACTGCATTGGGTGGTAGTTCTTGCTGCTCTTACTTACCGAAAGCGACTGAATCGTTGAGGCTGATGTTG AAGTATTGTGCTAGTTATGCTAGTATTTATTGGAGGACTGGTGTAAATGCTCCTGATGATCAAGTACCTGAGTATGGTATTAGAGTTGATTTTGATATTC CAGTGACTACAGATTGCCTTCAATGTCAAGACATGAAGAAAGGAGGTGGATCGTGTGGATTTGACACCCAATCACAGAGTTTCTTATGTCTATGCAATCA GAGATCAAATGTCACAACTTATTGCAATGATCACAGCAGTACTACTAGCCATAGCAAGGCAGGAGTCATTGCAGGGACTGTAACTGGAGTTTCAGCAGCT GGGGCCATAGGTATTGGTGCTGGTCTATGGTATTGGAAGAAAGTGAGAGCCACAGCACCAGTAACATGTGGGGTTCAAAGCAATGAGAATAGGCTCTTTT AA
AA sequence Show only first row Show all	>Potri.004G007400.1 pacid=42796258 polypeptide=Potri.004G007400.1.p locus=Potri.004G007400 ID=Potri.004G007400.1.v4.1 annot-version=v4.1 MAYNPSSCSCFHHSFCLLFIIFSFPYFFLTKAQAAGHCRTSCGTIPISYPFGIDDGCGSPYYRHILVCSDSGFLELRTPSGRYQVRSISYSDPHMIVTDP FMWSCQDGHHFRATRPFSLDTSTHLTLSSQNDYLFFNCSEERVIVQPKPIFCERFPDRCDSTCDSASYLCRHLPGCATALGGSSCCSYLPKATESLRLML KYCASYASIYWRTGVNAPDDQVPEYGIRVDFDIPVTTDCLQCQDMKKGGGSCGFDTQSQSFLCLCNQRSNVTTYCNDHSSTTSHSKAGVIAGTVTGVSAA GAIGIGAGLWYWKKVRATAPVTCGVQSNENRLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11915			unknown protein		Potri.004G007400 [exp]	0	1
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Potri.009G001500 [exp]	1.00	0.9195	AGO904
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.007G009200 [exp]	1.73	0.8992
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	2.23	0.8861
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	4.00	0.8545
AT1G34010			unknown protein		Potri.003G177200 [exp]	4.79	0.8388
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	4.89	0.8475
AT5G45540			Protein of unknown function (D...		Potri.015G116600 [exp]	7.34	0.8802
AT3G56810			unknown protein		Potri.016G024600 [exp]	9.79	0.8280
AT5G45540			Protein of unknown function (D...		Potri.015G107900 [exp]	9.89	0.9054
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	13.30	0.8249

Compare expression of checked genes

Potri.004G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.