Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 779 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 761 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 702 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 191 / 3e-56 Eukaryotic aspartyl protease family protein (.1) AT1G69100 191 / 8e-56 Eukaryotic aspartyl protease family protein (.1) AT5G43100 52 / 9e-07 Eukaryotic aspartyl protease family protein (.1) AT3G20015 48 / 1e-05 Eukaryotic aspartyl protease family protein (.1) AT5G10080 46 / 5e-05 Eukaryotic aspartyl protease family protein (.1) AT3G42550 45 / 0.0001 Eukaryotic aspartyl protease family protein (.1) AT3G12700 44 / 0.0002 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007600 [exp] 931 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.001G356900 [exp] 790 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 641 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 608 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 590 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 541 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 60 / 2e-09 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 58 / 9e-09 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 52 / 8e-07 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020024 [exp] 780 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10022957 [exp] 771 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 765 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 759 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 732 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 619 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 588 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 534 / 0 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10019309 [exp] 60 / 3e-09 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 59 / 1e-08 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.004G007600.4 pacid=42795271 polypeptide=Potri.004G007600.4.p locus=Potri.004G007600 ID=Potri.004G007600.4.v4.1 annot-version=v4.1 ATGGGAGTGAACTTGAAAGCAATTGTGGGGTTTGTGTTTCTTTCATTTCTGTTGTTTGCTGTTGTATCATCTGCGTCGAATGATGGTTTGCTTAGAATAG GATTAAAAAAGGTGAAACTTGATAAGAACAACCGAATTGCTGCGCGGCTTGATTCCAAAGAGACCTTGAGAGCTTCTATTAGGAAGTATAATCTTTGCGG TAATCTTGGAGAATCCGAGGATACTGATATTGTTGCATTGAAGAATTATCTGGATTCTCAGTACTATGGTGAGATTGGTGTTGGCTCTCCTCCTCAGAAG TTCACTGTGATCTTTGACACTGGTAGCTCCAATTTGTGGGTGCCATCATCTAAGTGCTATTTATCGGTTGCTTGTTACTTCCATTCCAAGTATGACTCTG GAAAATCAAGTACCTACAAGAAGAATGGAAAAAGTGCTGAAATTCGCTATGGCAGTGGATCTATTTCTGGTTTCTTCAGTAATGATGCTGTCGAAGTTGG TGGCCTGGTTGTGAAAGATCAGGAATTTATTGAGGCAACTAAGGAGCCTAATATCACATTTTTGGTGGCCAAGTTTGATGGTATATTGGGACTTGGGTTC AAAGAAATTTCAGTGGGAGATGCTGTGCCTGTCTGGGACAACATGATTAAACATGGTCTTATCAAGGAACCAGTATTTTCTTTCTGGCTTAACCGCAATG CAGAGGATGAAGAAGGGGGCGAAATTGTATTTGGTGGGATGGACCCAAATCATTACAAGGGCAAGCACACTTTTGTTCCTGTGACACGGAAAGGCTATTG GCAGTTCAACATGGGTGATGTCCATATTGGTGATAAACCAACTGGGTATTGTGCCAGCGGTTGTGCAGCAATTGCAGATTCTGGAACTTCCTTGTTGGCA GGTCCAACGACTATAATTACCATGATAAATCAAGCCATTGGAGCCTCTGGAGTTGTTAGCCAGCAATGCAAGGCTGTTGTTTCACAATATGGGGAAGCCA TAATGGACTTGCTACTCTCTCAGGCACAGCCAAAGAGGATTTGCTCTCAAATTGGACTTTGCACGTTTGATGGAACCCGTGGCATAAGCATTGGCATTCA GAGCGTGGTGGATGAGGGCAATGACAAGTCATCTGGTGTTCTTGGTGATGCTATGTGCCCTGCTTGTGAAATGGCAGTTGTCTGGATGCGAAGCCAGCTG AAGCAGAACCAGACACAAGATCGTATATTGGACTATGTGAATCAGCTTTGTGAACGTATGCCAAACCCAATGGGAGAATCAGCTGTTGACTGTGAAAGTG TTCCTTCCATGCCCACGGTTGCCTTCACAATTGGAGGCAAAGAGTTTGAGCTCGCTCCAGAGGAGTACATTCTCAAGGTTGGCCAGGGTTCAGCTGCCCA GTGCATCAGTGGCTTTACTGCTTTGGATATACCTCCTCCTCGTGGACCTCTCTGGATACTGGGAGATATTTTCATGGGTCGTTACCACACTGTCTTTGAT TCTGGAAAGCTAAGAGTTGGATTTGCAGAGGCAGCTTAA
AA sequence Show only first row Show all	>Potri.004G007600.4 pacid=42795271 polypeptide=Potri.004G007600.4.p locus=Potri.004G007600 ID=Potri.004G007600.4.v4.1 annot-version=v4.1 MGVNLKAIVGFVFLSFLLFAVVSSASNDGLLRIGLKKVKLDKNNRIAARLDSKETLRASIRKYNLCGNLGESEDTDIVALKNYLDSQYYGEIGVGSPPQK FTVIFDTGSSNLWVPSSKCYLSVACYFHSKYDSGKSSTYKKNGKSAEIRYGSGSISGFFSNDAVEVGGLVVKDQEFIEATKEPNITFLVAKFDGILGLGF KEISVGDAVPVWDNMIKHGLIKEPVFSFWLNRNAEDEEGGEIVFGGMDPNHYKGKHTFVPVTRKGYWQFNMGDVHIGDKPTGYCASGCAAIADSGTSLLA GPTTIITMINQAIGASGVVSQQCKAVVSQYGEAIMDLLLSQAQPKRICSQIGLCTFDGTRGISIGIQSVVDEGNDKSSGVLGDAMCPACEMAVVWMRSQL KQNQTQDRILDYVNQLCERMPNPMGESAVDCESVPSMPTVAFTIGGKEFELAPEEYILKVGQGSAAQCISGFTALDIPPPRGPLWILGDIFMGRYHTVFD SGKLRVGFAEAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	1.41	0.9331
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	3.00	0.9231
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	3.16	0.9104
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	3.74	0.9313	CAld5H/F5H4,Pt-FAH1.4
					Potri.019G038310 [exp]	4.89	0.9093
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	7.34	0.9172
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	7.41	0.9187	Pt-4CL.3,Ptr4CL3
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.008G115100 [exp]	8.12	0.8800
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.016G006900 [exp]	8.24	0.8877
AT1G76070			unknown protein		Potri.002G016500 [exp]	8.77	0.9170

Compare expression of checked genes

Potri.004G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.