Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55090 322 / 9e-106 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 313 / 2e-102 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G05100 308 / 8e-102 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G32510 300 / 1e-98 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT3G50310 226 / 3e-70 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 224 / 4e-69 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 213 / 2e-65 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT1G07150 209 / 8e-62 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 207 / 1e-61 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT1G54960 201 / 4e-58 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007400 [exp] 656 / 0 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 370 / 2e-126 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.002G228200 [exp] 367 / 7e-124 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.007G044800 [exp] 231 / 7e-72 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G073200 [exp] 227 / 9e-69 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 225 / 2e-68 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.005G139200 [exp] 220 / 8e-68 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G130000 [exp] 216 / 6e-66 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.005G139300 [exp] 211 / 2e-64 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030042 [exp] 301 / 3e-98 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10022951 [exp] 301 / 1e-97 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10035284 [exp] 298 / 7e-97 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10021551 [exp] 294 / 2e-94 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10031544 [exp] 265 / 7e-83 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10012668 [exp] 220 / 1e-67 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034060 [exp] 207 / 7e-60 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 207 / 1e-59 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10019340 [exp] 189 / 6e-56 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10015185 [exp] 194 / 4e-55 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G007700.1 pacid=42795174 polypeptide=Potri.004G007700.1.p locus=Potri.004G007700 ID=Potri.004G007700.1.v4.1 annot-version=v4.1 ATGGACTGGACTAGAGGCCAAACCATTGGCCGTGGCTCATCAGCCACCGTCTCGATGGCCAGGGCCAACCAATCCGGTAAAGTCTTTGCGGTGAAGTCAG CTGAGCTATCAAAATCGGAGTCTCTTCAAAAGGAGCAAATTGTTCTTTCAACATTAAGGTGTCCGCAAATTGTAGCATATAAGGGGTGCGACATTACTAA TGAAAATGGTAAGGTCTTGTACAATCTTTTCTTGGAGTATGCATCCGGTGGCACGCTTATCGATGCAATTCGGGAGGGTGGAGGTTGTCTTGACGAGGAC ATGATCCGATTGTATGCTCGGACAATTTTGCTCGGCCTCGAGTATCTTCATTGTAATGGCATAGTGCATTGTGACATCAAGGGTCACAATATTTTGGTCA CTAGTGATGGGGCAAAAATTGCTGACTTGGGTTGTGCTAAGCGGGTTGATGAGGTGTCAGAAGCAGATTGGGGCACGACAACAACAATTGCAGGCACACC ACTTTACATGGCACCTGAAGTGGCGCGTGCTGAGCACCAAGGGTTCCCTGCTGATATATGGGCTGTTGGGTGTACCATTGTCGAGATGGCCACCGGACAG GCTCCATGGGTGAATGTCTCAGACCCAGTTTCAGCTCTTTACCAGATTGGGTTTTCGGGCAACGCGCCAGAGATTCCAAGCTTCATGTCTAAGCAAGCAA GAGACTTTTTGAGCAAGTGCTTGAAGAGGGACCCAATGGAAAGGTGGTCAGCCAGTGAATTACTTAAACATGATTTTATTATTGAAGAGCCAAATCTTAT TTTAAAGGAAAACAATAGCTCAAAAGCGGACACTCCAACATGTGTTCTGGATCAAGTCTTGTGGGACTCAATGGAGAAGTTAGAGACAACTTGGGATTCG ACCCATAATACTTCTCTGGTCTCTCCAAACGAAAGAATCAAGCAATTGACTGAAGGCAATGGAAAAGCACACAGCTGGTCGACATGGGGTGATGCTTGGG TCACAATAAGAAGCAACAAAAGTAGCAAGGAACAAGAAATGGTTTCTTGCAGTGAGGATTATAACATGGCATATGCCAATGGATCCATTGAAAATAGTGG GGCGGAGATAGCTTCGCTTAGCATGGAATATAACTTTGTCGTTCTTAACGAGCCCACAAGTATTAGTGGGAATAATACATGTAATAACACTAGCAGTGGT GGTAGCTGTCGTGATGACGGAAGGCATAAAATATTGTTGATGCCTTGTGAAGGTAGAAAAGATGCTTTATGTAAGCAATTCGAATTTTGTGAAGGAAATA AAGTTCTGTTTTCCACATCGCAATGCTTAGCTTGCTTATCTTCATATACTGTAGCCATGGCTGTTTCAAATTACATATCTGGTCATAATTAG
AA sequence Show only first row Show all	>Potri.004G007700.1 pacid=42795174 polypeptide=Potri.004G007700.1.p locus=Potri.004G007700 ID=Potri.004G007700.1.v4.1 annot-version=v4.1 MDWTRGQTIGRGSSATVSMARANQSGKVFAVKSAELSKSESLQKEQIVLSTLRCPQIVAYKGCDITNENGKVLYNLFLEYASGGTLIDAIREGGGCLDED MIRLYARTILLGLEYLHCNGIVHCDIKGHNILVTSDGAKIADLGCAKRVDEVSEADWGTTTTIAGTPLYMAPEVARAEHQGFPADIWAVGCTIVEMATGQ APWVNVSDPVSALYQIGFSGNAPEIPSFMSKQARDFLSKCLKRDPMERWSASELLKHDFIIEEPNLILKENNSSKADTPTCVLDQVLWDSMEKLETTWDS THNTSLVSPNERIKQLTEGNGKAHSWSTWGDAWVTIRSNKSSKEQEMVSCSEDYNMAYANGSIENSGAEIASLSMEYNFVVLNEPTSISGNNTCNNTSSG GSCRDDGRHKILLMPCEGRKDALCKQFEFCEGNKVLFSTSQCLACLSSYTVAMAVSNYISGHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.004G007700 [exp]	0	1
AT5G37730			unknown protein		Potri.004G089700 [exp]	6.08	0.6311
					Potri.001G055675 [exp]	21.81	0.6046
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	36.76	0.5872
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	40.38	0.5900
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.008G178000 [exp]	47.62	0.5703
AT2G01690			ARM repeat superfamily protein...		Potri.010G106700 [exp]	50.08	0.5732
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	52.99	0.5079
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	56.23	0.5429
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.002G214500 [exp]	58.99	0.5702
					Potri.003G133350 [exp]	62.44	0.5617

Compare expression of checked genes

Potri.004G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.