Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04480 333 / 2e-111 unknown protein AT4G22030 340 / 4e-111 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009100 [exp] 747 / 0 AT4G04480 332 / 5e-111 unknown protein Potri.004G009400 [exp] 736 / 0 AT4G04480 327 / 3e-109 unknown protein Potri.004G009000 [exp] 396 / 6e-136 AT4G22030 392 / 8e-132 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009300 [exp] 393 / 9e-135 AT4G22030 390 / 7e-131 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009500 [exp] 392 / 2e-134 AT4G22030 410 / 8e-139 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008800 [exp] 390 / 7e-134 AT4G22030 395 / 6e-133 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G006900 [exp] 379 / 4e-129 AT4G22030 362 / 9e-120 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G007000 [exp] 369 / 2e-125 AT4G22030 367 / 8e-122 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020029 [exp] 290 / 2e-94 AT4G22030 351 / 2e-115 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10020028 [exp] 284 / 6e-92 AT4G04480 335 / 2e-112 unknown protein Lus10015549 [exp] 124 / 3e-30 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10015548 [exp] 85 / 1e-19 AT4G04480 106 / 4e-28 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14476 [poplar] [flax] Chloroplast_duf Petal formation-expressed
Representative CDS sequence Show only first row Show all	>Potri.004G008000.1 pacid=42794573 polypeptide=Potri.004G008000.1.p locus=Potri.004G008000 ID=Potri.004G008000.1.v4.1 annot-version=v4.1 ATGGCAAGTCTTCAAGTTTCAGGCATGGTGGTTTCAGGTTCTTCATCCTCTTTCTGCAGTCATAAAAGTTTAGTTAGAGCCACTATAAATGGACCGAAAA TCCGGATCGGCCCTCTATCTCTACCAAGTCTTTCTAGCAAAGATTTTATTGAAGAACTGAGCATTAGATCAGTTGGTTATGGAATTCCGATAACTACACA AATGGAGAAGGGATCCGGTCCCAAGACCAGAAGTTCTGATCCAGTGGTGGTTGCCAAGCTTTACGCAGTCATGGAGGCTGTGGCAGATAGAATTGAGATG CACAAGAACATTGGAGAGCAAAGAGATAACTGGAACCACCTGCTTTTGAGTTCCATTCATGCTATGACTCTCACCGCAGCCACCATGTGTGGACTTGCAG CCGCTAGTGCAAGTGGTGAACCACTTGCAGGACTCAAGGTATCTTCGACGATACTATATCTTGCAGCAACCGGAATGTTGGCGATAATGAATAAGATCCA GCCATCACAACTTGCTGAAGAGCAAAGGAATGCTGCTAGGTTGTTCAAGCAGCTTCACGGCCAGATTCAAACTTTGTTGTCCGTTGGCAGTCCTACTGTT AGTGATGTCAACGAAGCAACGGAGAATGTTTTGGCTTTAGACAAGGCATATCCACTTCCATTATTAGGCGCCATGCTTGAAAGATACCCATCAAGTGTAG AGCCTGCAGTTTGGTGGCCTCAACAAAGGCGAAAACAAGCGAAAGGGATCGGTAGGAAGATAGAAGGAAATGGGTGGAATAGAGAGTTGGAAGATGAAAT GAGAGAAATTGTTGGGGTTTTGAAGAGAAAAGACCAGGCAGATTACTTGAGATTGAGTGGAAAGGCCTTGAAAGCTCACAAGGTGCTGGCGTTTTCTGGT CCTCTACTTACCGGTCTTGGAGCTTTGGGGTCGGCTTTCGTAGGAACTACTAACCCGTGGGCTGTGATATTAGGAGTTGCTGGTGGTGCCTTGGCAAGCG TAGTGAATGCAATGGAGCATGGAGGCCAAGTTGGGATGATATTTGAGATGTATAGAAGCAATGCAGGTTTCTTTAAGCTCATGGAAGAATCTATAGAATC AAACATAAACGAGACAAATGTATGGGGAAGAGAAAATGGACAAGTGTATGAAATGAAGGTGGCGTTACAGCTAGGCAGGAGCCTATCAGACCTCAGAAAC CTTGCAGCTTCATCTTCTTTAAGAAATATTGAGGAGGATACTGAAGAAGAATTTGGAAGCAAGCTTTTCTAG
AA sequence Show only first row Show all	>Potri.004G008000.1 pacid=42794573 polypeptide=Potri.004G008000.1.p locus=Potri.004G008000 ID=Potri.004G008000.1.v4.1 annot-version=v4.1 MASLQVSGMVVSGSSSSFCSHKSLVRATINGPKIRIGPLSLPSLSSKDFIEELSIRSVGYGIPITTQMEKGSGPKTRSSDPVVVAKLYAVMEAVADRIEM HKNIGEQRDNWNHLLLSSIHAMTLTAATMCGLAAASASGEPLAGLKVSSTILYLAATGMLAIMNKIQPSQLAEEQRNAARLFKQLHGQIQTLLSVGSPTV SDVNEATENVLALDKAYPLPLLGAMLERYPSSVEPAVWWPQQRRKQAKGIGRKIEGNGWNRELEDEMREIVGVLKRKDQADYLRLSGKALKAHKVLAFSG PLLTGLGALGSAFVGTTNPWAVILGVAGGALASVVNAMEHGGQVGMIFEMYRSNAGFFKLMEESIESNINETNVWGRENGQVYEMKVALQLGRSLSDLRN LAASSSLRNIEEDTEEEFGSKLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04480			unknown protein		Potri.004G008000 [exp]	0	1
AT4G04480			unknown protein		Potri.004G009400 [exp]	1.00	0.9500
AT4G04480			unknown protein		Potri.004G009100 [exp]	1.41	0.9490
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228300 [exp]	11.48	0.9215
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029700 [exp]	13.52	0.9234
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	17.54	0.9173
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029800 [exp]	18.16	0.9202
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.001G263200 [exp]	24.65	0.9016
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	25.21	0.9200
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	28.84	0.9158
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029600 [exp]	28.84	0.9126

Compare expression of checked genes

Potri.004G008000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.