Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04480 327 / 3e-109 unknown protein AT4G22030 334 / 7e-109 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009100 [exp] 744 / 0 AT4G04480 332 / 5e-111 unknown protein Potri.004G008000 [exp] 741 / 0 AT4G04480 333 / 2e-111 unknown protein Potri.004G009500 [exp] 391 / 5e-134 AT4G22030 410 / 8e-139 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009000 [exp] 391 / 6e-134 AT4G22030 392 / 8e-132 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009300 [exp] 389 / 5e-133 AT4G22030 390 / 7e-131 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008800 [exp] 384 / 4e-131 AT4G22030 395 / 6e-133 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G006900 [exp] 375 / 8e-128 AT4G22030 362 / 9e-120 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G007000 [exp] 367 / 2e-124 AT4G22030 367 / 8e-122 F-box family protein with a domain of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020029 [exp] 288 / 2e-93 AT4G22030 351 / 2e-115 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10020028 [exp] 281 / 1e-90 AT4G04480 335 / 2e-112 unknown protein Lus10015549 [exp] 122 / 1e-29 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10015548 [exp] 85 / 1e-19 AT4G04480 106 / 4e-28 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14476 [poplar] [flax] Chloroplast_duf Petal formation-expressed
Representative CDS sequence Show only first row Show all	>Potri.004G009400.2 pacid=42795333 polypeptide=Potri.004G009400.2.p locus=Potri.004G009400 ID=Potri.004G009400.2.v4.1 annot-version=v4.1 ATGGCAAGTCTTCAAGTTTCAGGCATGGTGGTTTCAGGTTCTTCATCCTCTTTTTGCAGTCATAAAAATTTAGTTAGAGCCACTATAAATGGACAGAAAA TCCGGATCGGCCCTCTATCTCTACCAAGGCTTTCTAGCAAAGATTTTATTGAAGAACTGAGCATTAGATCAGCTGGTTATGGAATTCCGATAACTACACA AATGGAGAAGGGATCCGGTCCCAAGACCAGTAGTTCTGATCCAGTGGTGGTTGCCAAGCTTCACGCACTCATGGAGGCTGTGGCAGATAGAATTGAGATG CACAAGAACATTGGAGAGCAAAGAGATAACTGGAACCACCTGCTTTTGAGTTCCATTCATGCTATGACTCTCACCGCAGCCACCATGTGTGGACTTGCAG CCGCTAGTGCAAGTGGTGAACCACTTGCAGGACTCAAGGTATCTTCGACGATACTATATCTTGCAGCAACCGGAATGTTGGCGATAATGAATAAGATCCA GCCATCACAACTTGCTGAAGAGCAAAGGAATGCTGCTAGGTTGTTCAATCAGCTTCACGGCCAGATTCAAACTTTGTTGTCCGTTGGCAGTCCTACTGTT AGTGATGTCAACGAAGCAACGGAGAATGTTTTGGCTTTAGACAAGGCATATCCACTTCCATTATTAGGCGCCATGCTTGAAAGATACCCATCAAGTGTAG AGCCTGCAGTTTGGTGGCCTCAACAAAGGCGAAAACAAGCGAAAGGGCTCGGTAGGAAGATAGAAGGAAATGGGTGGAATAGAGAGTTGGAAGATGAAAT GAGAGAGATTGTTGGGGTTTTGAAGAGAAAAGACAAGGCAGATTACTTGAGATTGAGTGGAAAGGCCTTGAAAGCTCACAAAATGCTGGCGTTTTCTGGT CCTCTACTTACCGGTCTTGGAGCTTTGGGGTCAGCTTTCGTAGGAACTTCTAACCCATGGGCTGTGATATTAGGAGTTGCTGGTGGTGCCTTGGCAAGCG TAGTGAATGCAATGGAGCATGGAGGCCAAGTTGGGATGATATTTGAGATGTATAGAAGCAATGCAGGTTTCTTTAAGCTCATGGAAGAATCTATAGAATC AAACATAAACGAGACAAATGTATGGGGAAGAGAAAATGGACAAGTGTATGAAATGAAGGTGGCGTTACAGCTAGGCAGGAGCCTATCAGACCTCAGAAAC CTTGCAGCTTCATCTTCTTTAAGAAATATTGAGGAGGATACTGAAGAAGAATTTGGAAGCAAGCTTTTCTAG
AA sequence Show only first row Show all	>Potri.004G009400.2 pacid=42795333 polypeptide=Potri.004G009400.2.p locus=Potri.004G009400 ID=Potri.004G009400.2.v4.1 annot-version=v4.1 MASLQVSGMVVSGSSSSFCSHKNLVRATINGQKIRIGPLSLPRLSSKDFIEELSIRSAGYGIPITTQMEKGSGPKTSSSDPVVVAKLHALMEAVADRIEM HKNIGEQRDNWNHLLLSSIHAMTLTAATMCGLAAASASGEPLAGLKVSSTILYLAATGMLAIMNKIQPSQLAEEQRNAARLFNQLHGQIQTLLSVGSPTV SDVNEATENVLALDKAYPLPLLGAMLERYPSSVEPAVWWPQQRRKQAKGLGRKIEGNGWNRELEDEMREIVGVLKRKDKADYLRLSGKALKAHKMLAFSG PLLTGLGALGSAFVGTSNPWAVILGVAGGALASVVNAMEHGGQVGMIFEMYRSNAGFFKLMEESIESNINETNVWGRENGQVYEMKVALQLGRSLSDLRN LAASSSLRNIEEDTEEEFGSKLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04480			unknown protein		Potri.004G009400 [exp]	0	1
AT4G04480			unknown protein		Potri.004G008000 [exp]	1.00	0.9500
AT4G04480			unknown protein		Potri.004G009100 [exp]	2.00	0.9411
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	19.74	0.9268
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	20.00	0.9229
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	21.63	0.9220
AT4G22030			F-box family protein with a do...		Potri.004G009300 [exp]	23.91	0.9193
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	31.62	0.9217	CYP716B4
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	31.74	0.9218
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	36.74	0.9215
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	37.52	0.9121

Compare expression of checked genes

Potri.004G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.