Plant FIBer expression Database

GDCST.2 (Potri.004G009600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol GDCST.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11860 735 / 0 Glycine cleavage T-protein family (.1.2.3)
AT1G60990 64 / 7e-11 Glycine cleavage T-protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G006800
[exp]
809 / 0 AT1G11860 734 / 0.0 Glycine cleavage T-protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001441
[exp]
728 / 0 AT1G11860 709 / 0.0 Glycine cleavage T-protein family (.1.2.3)
Lus10001624
[exp]
303 / 2e-101 AT1G11860 304 / 5e-102 Glycine cleavage T-protein family (.1.2.3)
Lus10012692
[exp]
56 / 4e-08 AT1G60990 509 / 2e-180 Glycine cleavage T-protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0289 FBD PF01571 GCV_T Aminomethyltransferase folate-binding domain
CL0289 PF08669 GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Representative CDS sequence
>Potri.004G009600.2 pacid=42794300 polypeptide=Potri.004G009600.2.p locus=Potri.004G009600 ID=Potri.004G009600.2.v4.1 annot-version=v4.1
ATGAGGGGAGGAGGTTTGTGGCAACTTGGCCAATCAATTACCCGCCGACTTGCTCAGGTTGATAAGAAGGTTGTGGGACGTCGATACTTTGCCTCAGAAG
CTGAGCTGAAAAAGACTGTTCTTTATGACTTCCATGTTGCTAATGGTGGCAAGATGGTGCCATTTGCTGGGTGGGGCATGCCCATTCAGTACAAGGACTC
TATCATGGAATCAACGGTGAATTGTAGACAGAACGGTAGCCTTTTTGATGTCTCACATATGTGTGGGTTGAGCCTCAAGGGCAAGGACTGTATTCCTTTC
CTAGAGAAGCTTGTTATTGCTGATGTTGCCGCGCTTGCACCTGGAACTGGGACTCTAACTGTCTTTACTAATGAGAAAGGAGGAGCAATTGATGATTCAG
TGATCACCAAAGTTCAGAATGATCACATGTACATAGTTGTGAATGCAGGGTGTAGAGATAAGGATCTTGCTCACATTGAGGAGCATATGAAGGCATTTAA
GGCAAAAGGTGGAGATGTCTCATGGCACATCCATGATGAGAGATCTCTTCTCGCCCTCCAGGGTCCTCTTTCTGCTTCTGTTCTCCAACACCTGACAAAA
GATGATTTGAGCAAGTTATACTTTGGGGAGTTCCGTATTACAGACATCAATGGAGCGTACTGCTTTATCACTAGGACAGGATACACTGGAGAAGATGGAT
TTGAAATATCAGTTCCTTCAGAGAATGCAGTGGATCTTGCCAAAGCAATCCTAGAAAAATCTGAAGGAAAAATAAGGTTGACAGGGCTTGGTGCCCGGGA
CAGTCTCCGACTTGAAGCTGGGCTGTGCTTATATGGTAATGACATGGAACAGCACATAACACCAGTAGAGGCAGGACTGTCTTGGGCGATAGGGAAGAGA
AGGAAGGCTGAAGGTGGCTTTCTGGGTGCTGAAGTAATACTCAAACAACTTGCAGAAGGTCCAAAAATTAGGCTTGTAGGATTTACCTCTACTGGTCCAC
CTCCCAGATCCCACAGTGAGATTCAGGATGAGAAAGGGACTAACATTGGAGAAATTACAAGTGGAGGATTTAGCCCATGCCTCAAGAAAAATATAGCCAT
GGGGTACGTGAAATCTGGTTCACACAAGGCAGGCACCAAAGCTAAAATACTGGTACGTGGGAAGGCCTATGATGGAGTTGTCACAAAAAAGCCATTTGTA
CCAACTAAATATTACAAGCCATCTTAA
AA sequence
>Potri.004G009600.2 pacid=42794300 polypeptide=Potri.004G009600.2.p locus=Potri.004G009600 ID=Potri.004G009600.2.v4.1 annot-version=v4.1
MRGGGLWQLGQSITRRLAQVDKKVVGRRYFASEAELKKTVLYDFHVANGGKMVPFAGWGMPIQYKDSIMESTVNCRQNGSLFDVSHMCGLSLKGKDCIPF
LEKLVIADVAALAPGTGTLTVFTNEKGGAIDDSVITKVQNDHMYIVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLSASVLQHLTK
DDLSKLYFGEFRITDINGAYCFITRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLSWAIGKR
RKAEGGFLGAEVILKQLAEGPKIRLVGFTSTGPPPRSHSEIQDEKGTNIGEITSGGFSPCLKKNIAMGYVKSGSHKAGTKAKILVRGKAYDGVVTKKPFV
PTKYYKPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11860 Glycine cleavage T-protein fam... Potri.004G009600
[exp]
0 1 GDCST.2
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G320500
[exp]
2.44 0.9339 SAHH.1
AT1G17745 PGDH D-3-phosphoglycerate dehydroge... Potri.010G249600
[exp]
5.47 0.9044
AT2G36880 MAT3 methionine adenosyltransferase... Potri.006G123200
[exp]
6.32 0.9113 AdoMet6
AT2G19760 PRF1, PFN1 profilin 1 (.1) Potri.001G190800
[exp]
8.36 0.8749 Pt-PRO1.1
AT2G27920 SCPL51 serine carboxypeptidase-like 5... Potri.009G003100
[exp]
8.54 0.8572
Potri.011G057400
[exp]
9.32 0.9072
AT1G03080 kinase interacting (KIP1-like)... Potri.003G164200
[exp]
11.22 0.9037
AT1G17120 CAT8 cationic amino acid transporte... Potri.001G378500
[exp]
11.22 0.8950 Pt-CAT8.3
AT1G12500 Nucleotide-sugar transporter f... Potri.003G118000
[exp]
11.31 0.9003
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Potri.017G059400
[exp]
12.12 0.9028 Pt-SAHH.2

Potri.004G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.