Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 100 / 4e-26 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 99 / 1e-25 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT1G01530 89 / 4e-22 MADS AGL28 AGAMOUS-like 28 (.1) AT4G36590 89 / 5e-22 MADS MADS-box transcription factor family protein (.1) AT1G65360 81 / 7e-19 MADS AGL23 AGAMOUS-like 23 (.1) AT2G34440 79 / 1e-18 MADS AGL29 AGAMOUS-like 29 (.1) AT1G60920 74 / 1e-16 MADS AGL55 AGAMOUS-like 55 (.1) AT1G72350 74 / 3e-16 MADS MADS-box transcription factor family protein (.1) AT3G66656 70 / 3e-15 MADS AGL91 AGAMOUS-like 91 (.1) AT1G47760 69 / 5e-15 MADS AGL102 AGAMOUS-like 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002400 [exp] 105 / 6e-29 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 101 / 4e-27 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 97 / 4e-25 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 96 / 9e-25 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.002G062000 [exp] 94 / 1e-24 AT2G24840 87 / 3e-21 DIANA, AGAMOUS-like 61 (.1) Potri.016G118900 [exp] 94 / 5e-24 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.001G251400 [exp] 92 / 1e-23 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 90 / 1e-22 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.017G040600 [exp] 86 / 6e-21 AT5G60440 117 / 7e-32 AGAMOUS-like 62 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012449 [exp] 83 / 2e-19 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 81 / 6e-19 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10016563 [exp] 75 / 5e-17 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10030663 [exp] 74 / 7e-17 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10040832 [exp] 72 / 1e-15 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10030824 [exp] 71 / 1e-15 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10028490 [exp] 71 / 6e-15 AT4G36590 108 / 3e-28 MADS-box transcription factor family protein (.1) Lus10031073 [exp] 70 / 9e-15 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10015271 [exp] 69 / 1e-14 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10011787 [exp] 67 / 4e-14 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.004G010200.1 pacid=42796581 polypeptide=Potri.004G010200.1.p locus=Potri.004G010200 ID=Potri.004G010200.1.v4.1 annot-version=v4.1 ATGCAAGAAACGGAATTAGTAAACACTACAAGGAGATGGGGCACGGGCCGGAAGAAGGTGGAGATGAAGAAAATAGAGAGCAAAAGCAGCCTAATAGTGA CTTTTTGCAAGAGACGCAATGGTCTTTTCAAGAAAGCTAGTGAATTTTGCAATTTATATGATGATGCCAGTCTTGCTATAGTCGTTTTGTCCCCTAACCA AAGACCATACTCTTTTGGTCATCCTGATGTGAATACCGTCGTTGATCAATGCCTTGGTGATCAAGAAAGCAGTGAAAGAAACAATATTTCTTGTTCAGAG GACACACATGGGAAAAACAACATGGATTGTGACAACATTAATGAAGAAGGAGAAGGGTGTTGGTGGGAGAGGTCGGTTGAAGATATGAATTTGGAGGAAC TTGAAAAGTTTAGGGCATCTTTGGAAACATTGAAGAATAATGTGGCAATGAGAGTCCGAGAGGAGAGGAGAACAAGAGTTAGTACCAGGGATTTCTTGGG TGGTTTTTCATAG
AA sequence Show only first row Show all	>Potri.004G010200.1 pacid=42796581 polypeptide=Potri.004G010200.1.p locus=Potri.004G010200 ID=Potri.004G010200.1.v4.1 annot-version=v4.1 MQETELVNTTRRWGTGRKKVEMKKIESKSSLIVTFCKRRNGLFKKASEFCNLYDDASLAIVVLSPNQRPYSFGHPDVNTVVDQCLGDQESSERNNISCSE DTHGKNNMDCDNINEEGEGCWWERSVEDMNLEELEKFRASLETLKNNVAMRVREERRTRVSTRDFLGGFS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G010200 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038500 [exp]	9.38	0.6472
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	22.64	0.5370
AT1G76750			Protein of unknown function (D...		Potri.003G191800 [exp]	23.23	0.4986
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017800 [exp]	27.92	0.6455
					Potri.010G121650 [exp]	46.28	0.4704
					Potri.003G073750 [exp]	55.16	0.5711
AT3G09110			Protein of unknown function (D...		Potri.008G050000 [exp]	113.36	0.4431
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	182.41	0.4648
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.001G023200 [exp]	224.29	0.4421
					Potri.010G058050 [exp]	224.73	0.4421

Compare expression of checked genes

Potri.004G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.