Plant FIBer expression Database

Potri.004G010400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11800 456 / 2e-157 endonuclease/exonuclease/phosphatase family protein (.1)
AT1G55915 46 / 5e-05 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G010900
[exp]
481 / 7e-168 AT1G11800 345 / 7e-116 endonuclease/exonuclease/phosphatase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020021
[exp]
488 / 1e-169 AT1G11800 489 / 1e-171 endonuclease/exonuclease/phosphatase family protein (.1)
Lus10015544
[exp]
407 / 2e-138 AT1G11800 417 / 1e-143 endonuclease/exonuclease/phosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Potri.004G010400.1 pacid=42794319 polypeptide=Potri.004G010400.1.p locus=Potri.004G010400 ID=Potri.004G010400.1.v4.1 annot-version=v4.1
ATGCAATCTTTGTTGCAAAAAATAACCTTCGTGCCCATCGTCATCATCTCTCCCCTTTCTAAACCTAGTAAAAGCTGCAATCTTTCTGTTCATCTCTCAA
ACCTCATGTCTTGGTCTTGCAAGAAGTGTACTTTCATTAACTCTCCATCACCAAAACCCACTTGCCAAATCTGTCTCTCACCTCCTTCACCCCCTCCACT
ACCTTCCTCTTCTTCAAATCAAGAAACCCCAAAATGGTCTTGCAAGGCTTGCACTTTCTTGAACCCGTATAAGAACAGTAGCTGTGAAGTATGTGGCACT
AGAGGTTCTGTTTTTTCTCTTTCTAGTTTAGAGGATTTGACCGATACTAGTGGTCTTGATGGTGATGTGGATTCTTCTGTTGGGTCTGTTTTCATGCCCT
TAAGGCATTGTAAGAGGAAGGTTAGAGACTCAGTTGACGATCATCAAGAGGGTGGGTTTCGTGGGGTTATGTCTTTGAACAATGTCGAAGTTGGAGGTGA
TGAGGATTCTGCGAAATTGGGTGCATTCCAAGGTGTTAAAGCATCAAACAAGGGAGTGACTGTTTTAAAGGATGGAGGTGATGGCCATAGTGTGAAATTG
GGTGGGTTTCAAGGGGTTAAATCATCAAACAAGGGAGTCACAGTTCTAAAGGATGAAAGTGATGGGGCTAGTGTGAAATTGGGTGCGTTTCAAGGTGCTA
GGGCATCAAACAAGGGAGTGGCTGTTTTGACAGAGGATACAAATTCAGCAGCAGTGCTTGGTTCCTTCAAGATTTTGAGCTATAATGTTTGGTTCCGAGA
AGACCTGGAGATGCATAGGAGGATGAAAGCACTTGGGGAACTTATTCAACTACATTCACCAGATGTCATTTGTTTACAGGAGGTTATTCCAGATATATAT
GACATATTTCAGCGATCCAGCTGGTGGAAAGCTTATCAATGCTCTGTTTCTTCTGAAATAGCAAGTTCAAGAGGATACTTTTGCATGCAGTTAAGCAAAC
TGCCAGTAAAATCCTTCAGCACTAAACCCTTTATGAATTCAATAATGGGGAGAGAACTTTGCATTGCTGAGCTTGAAGTTCCAGGAAAAAAGTCATTAGT
TGTTGCCACTAGCCATCTAGAGAGTCCATGTCCAGCACCTCCAAAATGGGATCAGATGTTCAGCAAGGAACGTGTGGATCAGGCAAAGGAGGCCATCAAC
CTTCTCAAGAAGAACTCAAATGTGATTTTTTGTGGTGACATGAACTGGGATGATAAGTTGGATGGTCAGTTTCCTTTCCCTGATGGATGGGTTGATGCCT
GGGTAGAGTTGAAGCCAGGGGACAATGGATGGACATATGATACCAAATCCAATCAAATGTTGTCTGGTAATCGTGCATTGCAAAAGAGACTGGATCGATT
CATATGCAGTCTGTGTGATTTCAAGATCAGTAAAATTGACATGATTGGTAAGGATGCAATACCTGGCTTATCATATATGAAGGAGAAGAAAGTGAGAAAA
GAGGTAAAGATGTTGGAGTTACCTGTCTTGCCTAGTGACCATTATGGTTTGCTTTTAACAATATCCGGTCTGTAA
AA sequence
>Potri.004G010400.1 pacid=42794319 polypeptide=Potri.004G010400.1.p locus=Potri.004G010400 ID=Potri.004G010400.1.v4.1 annot-version=v4.1
MQSLLQKITFVPIVIISPLSKPSKSCNLSVHLSNLMSWSCKKCTFINSPSPKPTCQICLSPPSPPPLPSSSSNQETPKWSCKACTFLNPYKNSSCEVCGT
RGSVFSLSSLEDLTDTSGLDGDVDSSVGSVFMPLRHCKRKVRDSVDDHQEGGFRGVMSLNNVEVGGDEDSAKLGAFQGVKASNKGVTVLKDGGDGHSVKL
GGFQGVKSSNKGVTVLKDESDGASVKLGAFQGARASNKGVAVLTEDTNSAAVLGSFKILSYNVWFREDLEMHRRMKALGELIQLHSPDVICLQEVIPDIY
DIFQRSSWWKAYQCSVSSEIASSRGYFCMQLSKLPVKSFSTKPFMNSIMGRELCIAELEVPGKKSLVVATSHLESPCPAPPKWDQMFSKERVDQAKEAIN
LLKKNSNVIFCGDMNWDDKLDGQFPFPDGWVDAWVELKPGDNGWTYDTKSNQMLSGNRALQKRLDRFICSLCDFKISKIDMIGKDAIPGLSYMKEKKVRK
EVKMLELPVLPSDHYGLLLTISGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11800 endonuclease/exonuclease/phosp... Potri.004G010400
[exp]
0 1
AT5G14090 unknown protein Potri.001G059100
[exp]
6.63 0.8382
Potri.003G070000
[exp]
12.44 0.8315
AT1G71440 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tu... Potri.019G072700
[exp]
14.49 0.8083 Pt-PFI.1,TFCFE
AT5G51960 unknown protein Potri.010G217300
[exp]
14.62 0.7235
AT5G58560 FOLK farnesol kinase, Phosphatidate... Potri.009G074700
[exp]
23.36 0.7519
AT5G45480 Protein of unknown function (D... Potri.006G013400
[exp]
23.49 0.8202
AT4G28220 NDB1 NAD(P)H dehydrogenase B1 (.1) Potri.013G147200
[exp]
24.65 0.8327
AT3G63240 DNAse I-like superfamily prote... Potri.002G050000
[exp]
26.98 0.8180
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Potri.004G099500
[exp]
27.74 0.8271
AT2G25770 Polyketide cyclase/dehydrase a... Potri.018G046100
[exp]
35.55 0.8266

Potri.004G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.