Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11820 795 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 538 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 521 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 435 / 2e-148 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 352 / 2e-116 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 336 / 3e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 321 / 1e-104 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 317 / 3e-103 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 313 / 8e-101 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 298 / 5e-95 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G006100 [exp] 957 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 565 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 563 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 561 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 547 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G006500 [exp] 438 / 1e-149 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.003G218500 [exp] 431 / 4e-147 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.014G158400 [exp] 336 / 3e-110 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 335 / 8e-110 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031456 [exp] 778 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 561 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 554 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10007929 [exp] 545 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004044 [exp] 545 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034607 [exp] 528 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 439 / 1e-149 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 398 / 2e-134 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 345 / 1e-113 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 324 / 1e-105 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.004G010500.1 pacid=42794846 polypeptide=Potri.004G010500.1.p locus=Potri.004G010500 ID=Potri.004G010500.1.v4.1 annot-version=v4.1 ATGGCACTGTCTAAGCTTCCTCTCTGCAGTGTCTTCTTCTTCCTGTACATTTCACTTTTTATATCATCACAAGCTTTATCATCAAAAATAGCAGTGGCAC AAATCAAGGACCAACAAGACAATGAGCCATTTGTGGGAATCAACATAGGAGAAGATGTGTCCAATCTTATGTCAGCTACAGAACTTGTTTCATTTCTACA ATTTCAAAAGGTTACACATATCAAGCTTTATGATGTAGACCCCGACATACTCAAGGCCTTGGCTAACACCAAGATCCGGGTCATTATTAGTGTTCCAAAT AATCAGCTTCTTGCTATTGGATCCTCCAATACAACTGCAGCTTCTTGGATTGGTAAAAATGTTGTTGCTTATTATCCACAGACTGTAATTACTGCAATTG CTGTTGGTGATGAGGTTTTAACTACAGTACCCTCTTCAGCTCCTTTGCTTATGCCAGCTATTGAGTCTCTTTATAGTGCTTTGGTGGCTGAAAATTTGCA TAATCAGATAAAGATTTCAACTCCACACTCTGCTTCTATAATTCTTGATTCATTTCCACCTTCTCAGTCTTTTTTTAATCAGAGTTGGATCTCGGTTATT CAACCGTTGCTTCATTTTTTATCAAGAACTGGGTCACCTTTGATGATGAATTTTTATCCTTACTATGTGTTTATGCAAAATAAAGGAGTGGTGCCTCTTG ATAATTCTTTGTTCAAGCCCTTGACACCATCCAAGGAAATGGTTGATCCTAATACTTTGTTGCATTACACTAATGTTCTTGATGCTATGGTTGATGCTGC TTATTTTTCGATGAAGAATATGAATTTTACTGATGTTGTGGTTCTTGTTACCGAGAGTGGTTGGCCTTCAAAGGGTGATTCAAAAGAACCTTATGCTACA ATTGACAATGCAGATACTTATAATTCTAATTTGATTAAGCATGTTCTTGATCGTAGCGGGACTCCTTTGCACCCAGAAATCACTTCTAGTGTGTATTTAT ACGAGTTGTTCAATGAAGACTTGAGGTCACCACCAGTATCAGAAGCAAATTGGGGATTGTTTTATGCGAATTCGACACCGGTTTATTTGCTTCATGTATC TGGAAGTGGGACTTTCTTGGCTAATGATACAACCAACCAAACATATTGTATTGTTATGGATGGTGTTGATTCAAAGACATTGCAAGCAGCATTGGATTGG GTATGTGGACCAGGAAGGGCTAATTGTAGCGAGATTCAGCCAGGGGAGAATTGTTATCAGCCTAACAATGTTAAGAACCATGCCTCTTATGCATTTGATA GCTATTACCAGAAGGAAGGAAGGGCTTCCGGGTCCTGTGATTTCAAGGGCATTGCCATGACCACTACTACCGATCCAAGTCATGGGAGCTGTATATTTCC TGGAAGCAAAAAAATAACGAATAAGGCGAGGACGGTGGTGAACACAACCAATCCAAGTAACGCAGCGGGTGGTTCAAGATTAATCAGCTTCAAAAGCAGT AGAATGAGTGCAGTAGACAAGGCATTACAAACTCTCTTGACTGTAATCTTCTCTATTTTGTTATACATTCCCTTTATGATGTCTTGA
AA sequence Show only first row Show all	>Potri.004G010500.1 pacid=42794846 polypeptide=Potri.004G010500.1.p locus=Potri.004G010500 ID=Potri.004G010500.1.v4.1 annot-version=v4.1 MALSKLPLCSVFFFLYISLFISSQALSSKIAVAQIKDQQDNEPFVGINIGEDVSNLMSATELVSFLQFQKVTHIKLYDVDPDILKALANTKIRVIISVPN NQLLAIGSSNTTAASWIGKNVVAYYPQTVITAIAVGDEVLTTVPSSAPLLMPAIESLYSALVAENLHNQIKISTPHSASIILDSFPPSQSFFNQSWISVI QPLLHFLSRTGSPLMMNFYPYYVFMQNKGVVPLDNSLFKPLTPSKEMVDPNTLLHYTNVLDAMVDAAYFSMKNMNFTDVVVLVTESGWPSKGDSKEPYAT IDNADTYNSNLIKHVLDRSGTPLHPEITSSVYLYELFNEDLRSPPVSEANWGLFYANSTPVYLLHVSGSGTFLANDTTNQTYCIVMDGVDSKTLQAALDW VCGPGRANCSEIQPGENCYQPNNVKNHASYAFDSYYQKEGRASGSCDFKGIAMTTTTDPSHGSCIFPGSKKITNKARTVVNTTNPSNAAGGSRLISFKSS RMSAVDKALQTLLTVIFSILLYIPFMMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.004G010500 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Potri.008G013500 [exp]	2.44	0.8374
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G099400 [exp]	5.29	0.7975
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	5.65	0.8418
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	11.00	0.7892
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	18.38	0.7815
AT3G05470			Actin-binding FH2 (formin homo...		Potri.013G017900 [exp]	22.36	0.7893
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	22.95	0.7707	I.2
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G176966 [exp]	28.42	0.8044
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	28.53	0.7629
AT1G02550			Plant invertase/pectin methyle...		Potri.014G119400 [exp]	28.80	0.8025

Compare expression of checked genes

Potri.004G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.