Plant FIBer expression Database

Potri.004G010900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11800 345 / 6e-116 endonuclease/exonuclease/phosphatase family protein (.1)
AT2G42520 47 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G010400
[exp]
491 / 3e-172 AT1G11800 456 / 2e-157 endonuclease/exonuclease/phosphatase family protein (.1)
Potri.003G217800
[exp]
111 / 2e-26 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.001G007900
[exp]
79 / 9e-16 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.006G196000
[exp]
53 / 3e-07 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020021
[exp]
377 / 8e-128 AT1G11800 489 / 1e-171 endonuclease/exonuclease/phosphatase family protein (.1)
Lus10015544
[exp]
293 / 1e-95 AT1G11800 417 / 1e-143 endonuclease/exonuclease/phosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Potri.004G010900.2 pacid=42794202 polypeptide=Potri.004G010900.2.p locus=Potri.004G010900 ID=Potri.004G010900.2.v4.1 annot-version=v4.1
ATGAATACGAGGAGTTCATGGGCTGATTTGGCTTCGAATTCTGCAGATGAGCGCACAAATGCTGGCTCTTCTGCTAACAATGAAAGTGTAGGTACTGCGG
GAAATGCCCCTACTCGATCCACATATGTCCCTCCTCATCTCCGCAACCGCGCGCCATCTTCAGATCCACCAGCTGCTGCCTTTAGCGGGCCTGCGTCGAG
TAATGATCGTCCTGGGTATGGTGGTGGATCTCGCTGGGGTGTTCCCCGAAATGATTACCGCGGTGGGTATGGTAGTGGTGGTGGGAGAGGTGGTTGGGAT
CGTGGGAGAGAGAGAGAAGTGGATCCTTTTGGAAGTGATAGGGCTTCTACGAGATTGGGTGGATTCCATGGGATTAAAGCATCAAACAAGGGAGTGATTG
TTTTAAAGGATGGGGGTGATGGGCATAGTGAGAAATTGGGTGGGTTTCAATTTTCAAGGGATACAAATTCAGTAGCAGTGTTTGGTTCCTTAAAGATTTT
GAGCTACAATGTTTGGTTCCGAGCAGACCTGGAGATGCATAGGAGGATGGAAGCACTTGGTGAACTTATTCAACTACATTCACCAGATGTCATTTGTTTA
CAGATATATGACATATTTCAGCAATCCAGCTGGTGGAAAGCATATCAATGCTCTGTTTCTTCTGAAATAGCAAGTTCAAGAAGATACTTTTGCATGCAGT
TAAGCAAACTACCAGTAAAATCTTTCAGCACTAAACCCTTTATGAATTCAATAATGGGGAGAGAACTTTGCATTGCTGAGCTTGAAGTACCAGGAAAAAA
GTCATTAGTTGTTGCCACTAGCCATCTAGAGAGTCCTTGTCCAGCACCTCCAAAATGGGATCAGATGTTCAGCAAGGAACGTGTGGATCAGGCAAAGGAG
GCCATCAACCTTCTCAAGAAGAACTCAAATGTGATTTTTTGTGGTGACATGAACTGGGACGATAAGTTGGATGGTCAGTTTCCTTTCCCTGATGGATGGG
TTGATGCCTGGGTAGAGTTGAAGCCAGGGGACGATGGATGGGAATATTTAGACACGATCAGTAAAATTGACATAATTGGTAAGGAGGCAATACCTGGGTT
ATCATATATCAAGGAGAAGAAAGTGAGAAGAGAGGTAAAGATGTTGGAGCTTCCTGTCTTGCCTAGCGATCATTATGGTGTGCTTTTAACAATATCAGGT
CTGTAA
AA sequence
>Potri.004G010900.2 pacid=42794202 polypeptide=Potri.004G010900.2.p locus=Potri.004G010900 ID=Potri.004G010900.2.v4.1 annot-version=v4.1
MNTRSSWADLASNSADERTNAGSSANNESVGTAGNAPTRSTYVPPHLRNRAPSSDPPAAAFSGPASSNDRPGYGGGSRWGVPRNDYRGGYGSGGGRGGWD
RGREREVDPFGSDRASTRLGGFHGIKASNKGVIVLKDGGDGHSEKLGGFQFSRDTNSVAVFGSLKILSYNVWFRADLEMHRRMEALGELIQLHSPDVICL
QIYDIFQQSSWWKAYQCSVSSEIASSRRYFCMQLSKLPVKSFSTKPFMNSIMGRELCIAELEVPGKKSLVVATSHLESPCPAPPKWDQMFSKERVDQAKE
AINLLKKNSNVIFCGDMNWDDKLDGQFPFPDGWVDAWVELKPGDDGWEYLDTISKIDIIGKEAIPGLSYIKEKKVRREVKMLELPVLPSDHYGVLLTISG
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11800 endonuclease/exonuclease/phosp... Potri.004G010900
[exp]
0 1
AT1G09740 Adenine nucleotide alpha hydro... Potri.005G157100
[exp]
5.09 0.8798
Potri.011G070800
[exp]
5.09 0.8812
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.009G138200
[exp]
8.66 0.8790
AT1G28120 unknown protein Potri.001G067400
[exp]
10.58 0.8596
AT1G07860 unknown protein Potri.009G093700
[exp]
19.05 0.8396
Potri.012G067350
[exp]
19.28 0.8598
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.012G068600
[exp]
22.13 0.8642
AT1G15110 PSS1 phosphatidylserine synthase 1,... Potri.010G117500
[exp]
24.24 0.7405
Potri.014G064950
[exp]
30.00 0.7846
Potri.003G027933
[exp]
31.74 0.8087

Potri.004G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.