Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35240 39 / 0.0002 ARF ARF20 auxin response factor 20 (.1) AT1G34410 38 / 0.0005 ARF ARF21 auxin response factor 21 (.1) AT1G35520 38 / 0.0009 ARF ARF15 auxin response factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G005300 [exp] 196 / 1e-66 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005601 [exp] 192 / 5e-65 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G006050 [exp] 188 / 2e-63 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005500 [exp] 135 / 2e-42 ND / Potri.011G005400 [exp] 135 / 2e-42 ND / Potri.011G004900 [exp] 119 / 5e-36 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.004G221600 [exp] 100 / 2e-28 AT3G53310 / AP2/B3-like transcriptional factor family protein (.1) Potri.011G005200 [exp] 94 / 6e-26 AT4G01500 50 / 3e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.004G221300 [exp] 86 / 1e-22 AT4G01500 48 / 4e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G011000.1 pacid=42796131 polypeptide=Potri.004G011000.1.p locus=Potri.004G011000 ID=Potri.004G011000.1.v4.1 annot-version=v4.1 ATGGAGGCGATGAACAAAGTACTATCCAACAGCGACACAGCAAATAAGAGACTCGAGTTTCCAGTTAGGAGTCTCCCGGCCTTCCCCATGCCTGACGGTC AGAACTCGATGGAATTTGTGGCCTTTGACAGGCTGCAAAAACCATGGAAATTTAAGGTCTCCATTCGCAATGAAGGAAGGTATCCCAAACCTTGGCTAAA TGGCGAATGGGATGACTATGTTCATCAGAAAGGGCTCAAAAAAGGAGATAAAGTTATCTTCACTATGGATGATCAAGAGAATGGCGACAGAATATATTAT ATCAGAGCTGAGAGAAAGCTTTTCGGTTTCTGGTATTCAATTGATCAGCAGTAA
AA sequence Show only first row Show all	>Potri.004G011000.1 pacid=42796131 polypeptide=Potri.004G011000.1.p locus=Potri.004G011000 ID=Potri.004G011000.1.v4.1 annot-version=v4.1 MEAMNKVLSNSDTANKRLEFPVRSLPAFPMPDGQNSMEFVAFDRLQKPWKFKVSIRNEGRYPKPWLNGEWDDYVHQKGLKKGDKVIFTMDDQENGDRIYY IRAERKLFGFWYSIDQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G011000 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	10.24	0.7159
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	12.72	0.7435
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	17.05	0.7344
					Potri.001G248704 [exp]	18.49	0.6766
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Potri.013G135600 [exp]	20.04	0.6275
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	24.65	0.7187
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.007G080000 [exp]	29.69	0.7092
					Potri.012G011490 [exp]	82.61	0.6563
AT5G60390			GTP binding Elongation factor ...		Potri.016G086500 [exp]	110.64	0.6245
AT3G53990			Adenine nucleotide alpha hydro...		Potri.006G092700 [exp]	168.66	0.6128	ENOD18.1

Compare expression of checked genes

Potri.004G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.