Plant FIBer expression Database

Potri.004G011450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G011801
[exp]
67 / 5e-15 ND /
Potri.004G011300
[exp]
52 / 2e-08 ND /
Potri.004G012000
[exp]
47 / 3e-07 ND /
Potri.004G011701
[exp]
37 / 0.001 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G011450.1 pacid=42794986 polypeptide=Potri.004G011450.1.p locus=Potri.004G011450 ID=Potri.004G011450.1.v4.1 annot-version=v4.1
ATGTCTATGTCTCTGGAGAGGGCGGTTGCTAGGGTTATTAGATCGGGTCTCTCTATTTTATTCATGGCAGAACTCTCACCTGCAAGTAAAGGGATATTTT
CGTCTCTCTCGTCTCACTTATCAAAAGAGGGCTGGAAAGCCCTAGAAGAACCAGAAAAGAAGAATGTCATGATGTCACATTCTCGCCATGGCAGAATTCT
CGCCCTTGTTCTACTAATCACAATCCTTTTCCCGAAGATTGGGTGCCTGCTTTTTTTCTCATGGGCCTTGTTGTTTATATGGGTAGCATATACTTTGCGT
GAGGAATTGTTACAGAATCGCTATACAATGCAGCTGTGCAAGTACTCGGGGGTCTTTACAATGCAGTTCTGCAAGCATATGCGAGTTTATACACTGCATT
TATCGAAGCAGATGCAGGTCATGGCATGA
AA sequence
>Potri.004G011450.1 pacid=42794986 polypeptide=Potri.004G011450.1.p locus=Potri.004G011450 ID=Potri.004G011450.1.v4.1 annot-version=v4.1
MSMSLERAVARVIRSGLSILFMAELSPASKGIFSSLSSHLSKEGWKALEEPEKKNVMMSHSRHGRILALVLLITILFPKIGCLLFFSWALLFIWVAYTLR
EELLQNRYTMQLCKYSGVFTMQFCKHMRVYTLHLSKQMQVMA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G011450
[exp]
0 1
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.017G009100
[exp]
7.34 0.8714
AT4G29990 Leucine-rich repeat transmembr... Potri.019G094600
[exp]
8.00 0.8742
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.012G120280
[exp]
8.77 0.8519
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.006G022300
[exp]
11.18 0.8140
AT1G67480 Galactose oxidase/kelch repeat... Potri.008G176000
[exp]
16.43 0.8314
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Potri.013G058300
[exp]
17.74 0.8244 Pt-GDH1.2
AT5G48850 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, ... Potri.002G240700
[exp]
18.43 0.8196
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.017G048200
[exp]
19.89 0.8352
AT2G15080 AtRLP19 receptor like protein 19 (.1.2... Potri.011G104600
[exp]
20.78 0.8290
Potri.008G175950
[exp]
21.49 0.8117

Potri.004G011450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.