Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21990 338 / 5e-116 3-Apr, PRH-26, PRH26, ATAPR3, APR3 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) AT4G04610 335 / 7e-115 1-Apr, PRH19, ATAPR1, APR1 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1) AT1G62180 327 / 8e-112 2-Apr, ATAPR2, APSR, PRH43, APR2 3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE \(PAPS\) REDUCTASE HOMOLOG 43, ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE, 5'adenylylphosphosulfate reductase 2 (.1.2) AT1G04980 51 / 1e-07 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G32920 49 / 6e-07 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 49 / 9e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT5G60640 48 / 2e-06 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G52260 43 / 7e-05 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G07960 42 / 9e-05 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT3G16110 42 / 0.0002 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012100 [exp] 399 / 5e-140 AT4G04610 697 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1) Potri.014G154200 [exp] 226 / 1e-72 AT4G21990 359 / 4e-121 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) Potri.014G160000 [exp] 50 / 4e-07 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.014G122800 [exp] 47 / 3e-06 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.009G013600 [exp] 47 / 6e-06 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.002G198300 [exp] 45 / 1e-05 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.009G004500 [exp] 41 / 0.0002 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.002G073000 [exp] 41 / 0.0002 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.005G186800 [exp] 40 / 0.0003 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015560 [exp] 321 / 4e-110 AT4G21990 663 / 0.0 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) Lus10020040 [exp] 318 / 4e-108 AT4G04610 672 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1) Lus10020691 [exp] 50 / 4e-07 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 49 / 1e-06 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10037403 [exp] 48 / 2e-06 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035360 [exp] 47 / 4e-06 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10036337 [exp] 47 / 4e-06 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 47 / 5e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036125 [exp] 44 / 9e-06 AT1G07960 214 / 1e-72 PDI-like 5-1 (.1.2.3) Lus10022581 [exp] 45 / 1e-05 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0039 [poplar] [flax] HUP PF01507 [poplar] [flax] PAPS_reduct Phosphoadenosine phosphosulfate reductase family
Representative CDS sequence Show only first row Show all	>Potri.004G011525.1 pacid=42795202 polypeptide=Potri.004G011525.1.p locus=Potri.004G011525 ID=Potri.004G011525.1.v4.1 annot-version=v4.1 ATGGCAAATGTTGAGGGACAAGATGTATGGAAGTTCCTTAGAACCATGGATGTGCCTGTGAACTCATTGCATTCAAAGGGATACATCTCTATTGGTTGCG AGCCTTGCACAAGGCCAGTTCTTCCTGGCCAACATGAGAGAGAAGGAAGGTGGTGGTGGGAGGATGCCACAGCTAAGGAATGTGGTCTTCATAAAGGAAA TCTGAAACAGGGTGATGCAGCCCAACTTAATGGCAATGGAAACGGGGCTGCCCATGCAAATGGGGCTGCCACTGTTGCTGATATTTTCAACTCCGAGAAT TTGGTCAATTTGAGCAGGCCCGGAATCGAGAACTTATTAAAATTAGAGAACCGAAAGGAACCATGGCTTGTGGTGCTCTACGCCCCATGGTGCCAATTTT GCCAAGGTATGGAAGCATCCTTTGTTGAATTGGCCGATAAGTTAGCAGGGAGTGGAGTAAAGGTGGGAAAATTCAGGGCAGATGGCGACCAGAAGGAATT CTCAAAGCAAGAATTACAGCTAGGAAGTTTTCCAACAATCCTTTTCTTCCCTAAACACTCATCTCGCCCAATCAAGTACCCCTCTGAGAAAAGGGACGTG GATTCATTGATGACTTTTGTGAATGCTCTCCGGTAA
AA sequence Show only first row Show all	>Potri.004G011525.1 pacid=42795202 polypeptide=Potri.004G011525.1.p locus=Potri.004G011525 ID=Potri.004G011525.1.v4.1 annot-version=v4.1 MANVEGQDVWKFLRTMDVPVNSLHSKGYISIGCEPCTRPVLPGQHEREGRWWWEDATAKECGLHKGNLKQGDAAQLNGNGNGAAHANGAATVADIFNSEN LVNLSRPGIENLLKLENRKEPWLVVLYAPWCQFCQGMEASFVELADKLAGSGVKVGKFRADGDQKEFSKQELQLGSFPTILFFPKHSSRPIKYPSEKRDV DSLMTFVNALR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Potri.004G011525 [exp]	0	1
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Potri.004G012100 [exp]	1.00	0.9975
					Potri.019G015700 [exp]	2.00	0.9831
AT3G56290			unknown protein		Potri.019G056400 [exp]	4.24	0.9778
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	6.00	0.9685
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	6.92	0.9572
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	9.00	0.9589
AT2G15020			unknown protein		Potri.009G094100 [exp]	9.16	0.9652
AT5G05220			unknown protein		Potri.013G090200 [exp]	10.90	0.9549
AT4G10270			Wound-responsive family protei...		Potri.001G408100 [exp]	12.00	0.9544
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	12.32	0.9598

Compare expression of checked genes

Potri.004G011525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.