Plant FIBer expression Database

Potri.004G011801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G011450
[exp]
67 / 3e-15 ND /
Potri.004G011600
[exp]
39 / 7e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G011801.1 pacid=42795206 polypeptide=Potri.004G011801.1.p locus=Potri.004G011801 ID=Potri.004G011801.1.v4.1 annot-version=v4.1
ATGGCAGAACTCTCACCTGCAAGTAAAGGGATATTTTCGTCTCTCTCGTCTCACTTATCAAAAGAGGGCTGGAAAGCCCTAGAAGAACCAGAAAAGACGA
GATGTCATGATGTCACTTACCTTTTGTCTCGCCACTGGTCCAGCTCACATTCAATTTCCTTTGATGTCACTTTCAAAGGGTTTTGGGATAACTCTCGTCT
TCATTTTTTTTTCTTTTTCTTTTTTTATAAGCATTTCGGATCGATACCCACCATGATTTTCCTGTTTTTGGTCTCTCTAAAGGGATTCACACCACGATGC
ACGATGGGTTTCTTCTCTTCTGTTTTAAATCTGCTGCTTATTTGA
AA sequence
>Potri.004G011801.1 pacid=42795206 polypeptide=Potri.004G011801.1.p locus=Potri.004G011801 ID=Potri.004G011801.1.v4.1 annot-version=v4.1
MAELSPASKGIFSSLSSHLSKEGWKALEEPEKTRCHDVTYLLSRHWSSSHSISFDVTFKGFWDNSRLHFFFFFFFYKHFGSIPTMIFLFLVSLKGFTPRC
TMGFFSSVLNLLLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G011801
[exp]
0 1
Potri.004G011600
[exp]
2.00 0.8895
AT5G40390 RS5, SIP1 seed imbibition 1-like, raffin... Potri.007G123400
[exp]
4.47 0.8264
AT3G18670 Ankyrin repeat family protein ... Potri.011G019200
[exp]
4.47 0.8436
AT4G00590 N-terminal nucleophile aminohy... Potri.014G080600
[exp]
4.58 0.8704
AT4G04980 unknown protein Potri.004G038400
[exp]
6.92 0.8057
AT5G07630 lipid transporters (.1) Potri.003G107501
[exp]
7.00 0.8371
AT5G54860 Major facilitator superfamily ... Potri.011G137300
[exp]
8.24 0.7954
AT5G20420 CHR42 chromatin remodeling 42 (.1) Potri.010G183766
[exp]
16.73 0.8271
AT3G50140 Plant protein of unknown funct... Potri.010G144200
[exp]
16.97 0.7772
Potri.019G026101
[exp]
17.54 0.8081

Potri.004G011801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.