Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATGLX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11840 496 / 6e-179 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G67280 441 / 7e-157 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G08110 70 / 3e-14 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160600 [exp] 452 / 8e-161 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G084800 [exp] 450 / 3e-160 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G042100 [exp] 416 / 2e-146 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.009G007200 [exp] 80 / 1e-17 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.006G239802 [exp] 85 / 3e-09 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G214966 [exp] 40 / 0.0002 AT1G08110 110 / 3e-32 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003523 [exp] 526 / 0 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 482 / 4e-174 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10043235 [exp] 448 / 3e-159 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 442 / 2e-156 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10038612 [exp] 384 / 7e-134 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10000007 [exp] 149 / 4e-45 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10021429 [exp] 74 / 8e-16 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10016138 [exp] 74 / 3e-15 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [poplar] [flax] Glyoxalase PF00903 [poplar] [flax] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G013200.10 pacid=42795964 polypeptide=Potri.004G013200.10.p locus=Potri.004G013200 ID=Potri.004G013200.10.v4.1 annot-version=v4.1 ATGGAGAATTACGGTATGGCTGAGGAGGCAGCGAAAGCAGTGACGCCAAACGCAGAGTTGCTGGAATGGCCGAAGAAAGACAAGCGTCGTTTGCTTCATG CTGTGTATCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTATACAGAAGGATTTGGAATGAAGTTATTAAGGCACAGGGATATACCAGAAGAGAAATA CTCCAATGCATTTCTTGGGTTTGGACCTGAAGAGTCTAATTTTGTTGTTGAATTAACTTACAATTATGGGGTGACTTCATATGATATTGGAGAAGGTTTT GGTCATTTTGCAATTGCAACTGAGGATGTTTATAAGCTAGTAGAAAAGCTCCGTGCCCTTGGTGGTAACGTTACTAGGGAACCTGGTCCGGTCAAAGGTG GAGCATCTGTAATTGCATTCGTGAAGGATCCTGATGGCTATGCTTTTGAGCTCATCCAGAGAGGTCCAACTCCTGAGCCCCTCTGCCAATTAATGCTCCG TGTTGGAGATCTTGATCGCTCTATCAAGTTCTATGAAAAGGCCTTGGGGATGAAGCTATTGAGGAAGATTGATAGACCTGAGTACAAGTACACATTGGCC ATGATGGGGTATGCTGATGAATATGAGACAACTGTTCTGGAATTGACTTACAACTATGGTGTGACTGAATACACCAAGGGAAATGCATATGCACAGGTTG CAATTAGTACTGATGATGTGTACAAAAGTGCTGAGGTTGTCAACCTTGTTACGCAAGAGCTTGGTGGTAAGATAACACGTCAACCAGGACCAATTCCTGG AATCAACACAAAAATCACCTCTTTTCTAGATCCAGATGGCTGGAAATCTGTTCTGGTTGACAATGAGGACTTCCTCAAAGAACTCCACAAGGAAGAGTGA
AA sequence Show only first row Show all	>Potri.004G013200.10 pacid=42795964 polypeptide=Potri.004G013200.10.p locus=Potri.004G013200 ID=Potri.004G013200.10.v4.1 annot-version=v4.1 MENYGMAEEAAKAVTPNAELLEWPKKDKRRLLHAVYRVGDLDRTIKFYTEGFGMKLLRHRDIPEEKYSNAFLGFGPEESNFVVELTYNYGVTSYDIGEGF GHFAIATEDVYKLVEKLRALGGNVTREPGPVKGGASVIAFVKDPDGYAFELIQRGPTPEPLCQLMLRVGDLDRSIKFYEKALGMKLLRKIDRPEYKYTLA MMGYADEYETTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGINTKITSFLDPDGWKSVLVDNEDFLKELHKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Potri.004G013200 [exp]	0	1	Pt-ATGLX1.1
AT5G45310			unknown protein		Potri.004G234300 [exp]	1.00	0.7181
AT5G53940			Yippee family putative zinc-bi...		Potri.011G115700 [exp]	3.46	0.7149
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	9.48	0.6757
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	10.19	0.6782
AT2G43780			unknown protein		Potri.019G096700 [exp]	14.83	0.6591
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	17.29	0.6434
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	18.24	0.7022
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	18.97	0.6280
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.008G107200 [exp]	24.45	0.6076
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	28.24	0.6312

Compare expression of checked genes

Potri.004G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.