Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53700 1091 / 0 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 338 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 321 / 3e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 313 / 8e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 308 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 305 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 303 / 4e-93 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 301 / 4e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 298 / 4e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 298 / 6e-91 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 344 / 1e-107 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 344 / 4e-107 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G111600 [exp] 323 / 7e-100 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 320 / 1e-98 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G148700 [exp] 311 / 1e-95 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 308 / 4e-95 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 310 / 8e-95 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 306 / 2e-94 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 305 / 9e-94 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006373 [exp] 1040 / 0 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 1038 / 0 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 343 / 3e-106 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 302 / 7e-93 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10030513 [exp] 300 / 4e-91 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 297 / 2e-89 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 295 / 1e-88 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 300 / 2e-88 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 290 / 4e-87 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027267 [exp] 286 / 6e-86 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G013300.1 pacid=42795507 polypeptide=Potri.004G013300.1.p locus=Potri.004G013300 ID=Potri.004G013300.1.v4.1 annot-version=v4.1 ATGGCTTTCACTTCCACTCTCAAGTACCACACTTGGTTTCCCTTCCACCACCACCTCGCCTCTCACAAACCCACCTCCAATTCCACTCTTTCTTTTGCTA CCACTAACCATGAGCCGCTCACCACGACCACCAACTCAGCAACCCGTCTATCTCCCAATTTCACTCCAACCCAACTCCTCCACTCCCTTCGCCGCGAAGA AGACTCCTCCGCCGTGATTCACCTGTTTTACTGGGCCTCAAAGCAGCCAAATTTCAAGCCCAGTTCATCCATCTTCAAGGAAGTTCTTCATAAACTTGGT AAAGCAGGTGAATTTGATGCAATGAAAGACATCTTGAAAGAAATGAAGATTTCTTTGTCTGTCATTGATAATGACTCTTTACTTGTTTTTATTGAAAGTT ATGCCAGTTTTGGATTATATAATGAGATTCTTCAGTTTGTTGATGCGATGGAAGTTGAATTTGGGGTAGTGGCGAATACCCATTTTTATAATTTCTTGTT GAATGTTCTTGTTGATGGAAATAAGTTGAAGTTAGTGGAAATTGCGCATTCTAATATGGTTAGTAGAGGAATTAGGCCTGATGTTTCGACTTTTAATATT TTAATTAAAGCTTTGTGTAGAGCTCATCAAATTAGGCCAGCCATTTTGTTGATGGAGGAGATGGAAGATTTTGGTTTGTTGCCGGACGAGAAAACGTTTA CTACTATAATGCAAGGGTTTATTGAGGAAGGGAACTTAGATGGTGCGATGAGAGTGAAAGAGCAAATGGTGGAAGCTGGATGTGTTGTGACTAATGTGAC TGTTAATGTTTTGGTTAATGGGTTTTGCAAAGAGGGAAGGATTGAGGAGGCGTTGAGGTTCATAGAAGAGATGTCGTTGAGGGAGGGATTTTTTCCGGAT AAGTATACCTTTAATATGTTGGTTAATGGGTTGAGTAAGACAGGTCATGTTAAGCATGCTTTAGAGGTTATGGATATGATGCTCAGGGAAGGGTTTGATC CGGATATATACACGTATAATTCTTTGATTTCAGGTTTGTGTAAGTTGGGTGAGGTTGATGAGGCCGTGAAAGTTCTCAACCAGATGATTGAGAGGGATTG TTCGCCGAATACGGTTACTTATAACACGATTATTAGTACCTTGTGTAAGGAGAACCAAGTTGAAGAGGCTACAAAACTTGCTCTTGTCTTGACTGGTAAG GGGATTTTACCAGATGTTTGTACATATAATTCTCTTATTCAAGGTTTGTGCTTGAGTCGAAACCATACCGTTGCAATGGAATTGTACAAGGAGATGAAGA CTAAAGGGTGCCATCCTGATGAGTTTACCTACAATATGTTGATTGACAGCCTTTGTTTTAGAGGGAAGCTTCAGGAAGCTCTGAATCTGCTTAAGGAAAT GGAAGTGAGTGGCTGTGCAAGAAATGTTATAACGTATAATACTTTGATTGATGGGTTTTGCAAAAACAAGAGGATTGCAGAAGCAGAGGAGATCTTTGAC CAGATGGAACTCCAAGGGGTTTCCAGAAATTCAGTGACCTACAATACCCTTATTGATGGTCTTTGTAAGAGCGAGAGGGTTGAGGAGGCTTCTCAATTGA TGGACCAGATGATAATGGAAGGGTTGAGGCCTGACAAATTCACCTACAATTCTCTGCTTACGTACTTCTGCAAGGCAGGGGACATAAAAAAAGCAGCAGA TATTGTTCAAACTATGGCTTCCGATGGGTGTGAACCAGATATTGTCACATACGGGACCCTGATTGCAGGACTGTGCAAGGCAGGTAGAGTTGAGGCTGCA ACTAAGCTCCTCAGAACCATTCAAATGAAAGGCATAAATCTGACCCCACATGCCTATAACCCTGTAATTCAAGCACTATTTAGACGGAAGAGATCGAAAG AAGCCGTGAGACTTTTCAGAGAAATGATAGAGAAGGCTGAGGCTCCAGATGCTGTCACATATAAGATTGTTTTCCGTGGGCTGTGCCAGGGTGGAGGACC AATTGGAGAAGCTGTTGATTTCGTTATGGAAATGCTAGAGAGAGGATATGTACCTGAATTCTCATCTTTCTATATGCTGGCCGAGGGGCTTTTTTCTTTA GCTATGGTGGGAACCCTGATTAAGCTCATAGATATGGTCATGGAGAAAGCAAAGTTCTCAGACAATGAAGTAACCATGATAAGGGGTTTCCTCAAGATTT CGAAGTACCAAGATGCTTTGGCCACCCTAGGAGGCATCCTGGATAGCAGAAAGCCCAATAGAGCTTACAGATGA
AA sequence Show only first row Show all	>Potri.004G013300.1 pacid=42795507 polypeptide=Potri.004G013300.1.p locus=Potri.004G013300 ID=Potri.004G013300.1.v4.1 annot-version=v4.1 MAFTSTLKYHTWFPFHHHLASHKPTSNSTLSFATTNHEPLTTTTNSATRLSPNFTPTQLLHSLRREEDSSAVIHLFYWASKQPNFKPSSSIFKEVLHKLG KAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNI LIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPD KYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFD QMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAA TKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSL AMVGTLIKLIDMVMEKAKFSDNEVTMIRGFLKISKYQDALATLGGILDSRKPNRAYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	5.65	0.9573
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	6.00	0.9521
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	6.70	0.9426
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	12.16	0.9502
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Potri.004G080100 [exp]	15.65	0.9234	Pt-MIND.1
AT5G52960			unknown protein		Potri.012G033700 [exp]	15.68	0.9506
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	15.90	0.9340
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	18.57	0.9374
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	19.59	0.9393
AT1G32580			plastid developmental protein ...		Potri.010G068300 [exp]	21.33	0.9469

Compare expression of checked genes

Potri.004G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.