Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDT1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11790 513 / 0 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT1G08250 418 / 3e-145 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT3G07630 414 / 9e-144 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT2G27820 406 / 2e-140 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 370 / 3e-126 ADT4 arogenate dehydratase 4 (.1) AT5G22630 362 / 1e-122 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 731 / 0 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 422 / 5e-147 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Potri.004G188100 [exp] 416 / 1e-143 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 414 / 6e-143 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015561 [exp] 469 / 6e-166 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015130 [exp] 462 / 4e-163 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 462 / 4e-163 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 458 / 3e-161 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020549 [exp] 410 / 1e-141 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 408 / 8e-141 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 408 / 1e-140 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 408 / 1e-140 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10036135 [exp] 393 / 9e-136 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10018128 [exp] 387 / 1e-132 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [poplar] [flax] PBP PF00800 [poplar] [flax] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Potri.004G013400.1 pacid=42796495 polypeptide=Potri.004G013400.1.p locus=Potri.004G013400 ID=Potri.004G013400.1.v4.1 annot-version=v4.1 ATGGCTGCTTCTCACATATGGGTTAGCCCTTTAAGGCCTCATTCTAATGTAGGTGTGTCAGATTTGGGGTTAAGGAGATGTGTGGATATGAGGTGCAATT GGGATCTTGAGAGGCTCCCTAGATGGGAATGTTGTTGTTTGAGTGTTTTGGCTCAAAGAGCTATCACTCCTGTTGAAGATGAGAAGCCTTTAATTCCTCA GGTGGAGACTTCTGAGGCAATTGATCAGGTTCAGGACACTCAGTCCAGGGGGTTTCACAAGGATTTGAACCTTCTTCCTAAACCGTTATCTGCTACAGAT ATTTTTTCTTCTCCTCGAAATAGTGCAAAAGTACGGGTTGCATATCAGGGGATGCCAGGTGCCTACGGTGAGGCTGCTGCGCTCAAAGCATATCCAAAGT GTGAAACTGTCCCATGTGAAGAGTTTGAAGCTGCTTTCAAGGCAGTTGAACTCTGGCTAGTGGATAAAGCAGTCCTCCCCATTGAGAGTTCAGTGGGTGG CAGCATCCACCGCAATTATGATTTACTCCTTCGCCATAGGCTGCATATAGTAGGGGAGGTGCAGATGGTAGTTAACCATTGCCTTTTGGGATTGCCTGGT GTACAGAAGGAGGAATTGAAACGTGTTTTGAGCCACCCCCAGGCACTTGATCAATGTGACATGATATTGACCAAATTAGGTGTTGTCAGAGTTAGTACTG ATGATACTGCAGGTGCTGCTCTGATGGTTGCGGCAAGTGGTGAAAGAGATTCTGGTGTGATCGCTAGTGATCGTGCAGCAGAAATCTATGGCCTTAACAT TCTATTGGAAAAAATCCAGGATGATGATGATAATATTACCCGCTTTTTGATACTTGCAAGAGAACCTATAATTCCTGGAACTGACAGGCCCCATAAGACA AGCATTGTTTTCACTCTGGAAGAAGGTCCTGGCATGCTGTTCAAAGCACTAGCGGTGTTTGCTTCGAGGGACATTAACTTGACAAAGATAGAGAGTCGCC CACAAAGAAAGCGTCCATTAAGGGTTGTTGATGATTCTAACAAGGGAAGTGCCAGGTACTTTGATTACCTTTTCTACATTGACTTTGAAGCTTCCATGGC AGAACCTCGGGCTCAGCACGCTATGGCACATTTGCAGGAATTTGCTAGCTTTCTTCGTGTTCTTGGCTGCTATGCAACAGATTCAGCTCTTTAG
AA sequence Show only first row Show all	>Potri.004G013400.1 pacid=42796495 polypeptide=Potri.004G013400.1.p locus=Potri.004G013400 ID=Potri.004G013400.1.v4.1 annot-version=v4.1 MAASHIWVSPLRPHSNVGVSDLGLRRCVDMRCNWDLERLPRWECCCLSVLAQRAITPVEDEKPLIPQVETSEAIDQVQDTQSRGFHKDLNLLPKPLSATD IFSSPRNSAKVRVAYQGMPGAYGEAAALKAYPKCETVPCEEFEAAFKAVELWLVDKAVLPIESSVGGSIHRNYDLLLRHRLHIVGEVQMVVNHCLLGLPG VQKEELKRVLSHPQALDQCDMILTKLGVVRVSTDDTAGAALMVAASGERDSGVIASDRAAEIYGLNILLEKIQDDDDNITRFLILAREPIIPGTDRPHKT SIVFTLEEGPGMLFKALAVFASRDINLTKIESRPQRKRPLRVVDDSNKGSARYFDYLFYIDFEASMAEPRAQHAMAHLQEFASFLRVLGCYATDSAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	0	1	PDT1
AT3G10540			3-phosphoinositide-dependent p...		Potri.008G028800 [exp]	5.47	0.8111
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.008G197600 [exp]	6.00	0.8064	Pt-HPT2.5
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	7.54	0.8456
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	7.87	0.8687
AT1G16170			unknown protein		Potri.003G186400 [exp]	10.39	0.8113
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.001G072300 [exp]	13.41	0.8459
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	16.12	0.8257	CAM2
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	16.52	0.8062
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.010G198800 [exp]	19.44	0.8062	EMB101.1
AT5G15710			Galactose oxidase/kelch repeat...		Potri.017G102300 [exp]	21.54	0.7862

Compare expression of checked genes

Potri.004G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.