Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62050 558 / 0 Ankyrin repeat family protein (.1) AT1G11740 540 / 0 ankyrin repeat family protein (.1) AT3G04470 343 / 6e-110 Ankyrin repeat family protein (.1) AT1G04780 335 / 2e-106 Ankyrin repeat family protein (.1) AT3G24210 315 / 1e-99 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004500 [exp] 869 / 0 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 413 / 5e-137 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 336 / 5e-107 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 333 / 5e-106 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 330 / 1e-104 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002942 [exp] 633 / 0 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 485 / 1e-167 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 339 / 3e-108 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 330 / 7e-105 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 335 / 3e-102 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 319 / 1e-99 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 263 / 1e-79 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 233 / 8e-73 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10027960 [exp] 113 / 8e-27 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [poplar] [flax] GPCR_chapero_1 GPCR-chaperone CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.004G013500.1 pacid=42795299 polypeptide=Potri.004G013500.1.p locus=Potri.004G013500 ID=Potri.004G013500.1.v4.1 annot-version=v4.1 ATGTCCAAATCCACCTCAACGTCGTCGTCTTCAGCATCAACAACACCGTCTCCTTCAATAAAACCAGAATCCTACGCTCACAGTCCAGTCCACTACGCCG TCGTGCTGGGGGACCACACAACCCTCACACGCCTCCTCTCCACTCTCCCCAGACTCACCGATCCCACCAAAATCCACACGGAGTCTGACTCGCTGAGTCA AGAACAACTTGTCGACAAAATATCCTCTCTCGTCGACCGCCGTGATGTCCCTTACCGTGAAACGCCTCTCCACCTTGCTGTCCGCTTAAACGACCTCTTC GCCGCCAAAGCCCTTGCAGCTGCTGGAGCTGACGTGTCGTTACAGAACTCCGCTGGCTGGAACCCCCTCCAGGAGGCATTATGTCGCCGGTACTCGGAAA TCGCTCTCATTCTTCTTCGTCTCCACCACCGCTCCGCCTGGTCCAAGTGGCGACGCCGCTTGCCTCGTCTCACTGCCGTCCTTCGCCGCATGCGCGACTT CTACATGGAAATTTCTTTCCACTTTGAAAGCTCAGTCATTCCTTTTGTAAACAAACTCGCTCCATCGGACACGTACAAGATCTGGAAACGTGACGCTAAT CTCCGAGCCGATACTACCTTGGCCGGCTTCGACGGCTTGAAAATCCAGCGCGCCGATCAAAGCTTCCTCTTCCTCGGCGACGGTGAACAAACTCACTCCA TTCCTCCTGGTTCTCTCTTAGTTCTCAACCACGATGAACGTAAAATCTTTGATGCATTCGAATCCGCGGGATCTCCTATGAGCGAGTCTGATATCGCCGG ATTCTGCTCCCAAACGAGCGTATACCGTCCCGGGATGGATGTCACTAAAGCCGAATTAATAAGCCGAACGAATTGGCGACGACAAGAGAAAACAGAATCT GTTGGCGAATGGAAAGCTAAAGTTTACGAATTAAACAACGTCGTTTTCAGCTTTCGATCTCGTAAAGTAAGCGAAAACGACGTCGCAGGAAGCGAGCAAG TTTTGCCGTTAGAGCTCGACGAAGATGGTGACGGCTTTTTAGTGGCCGAAAATCCTAGCTTTCTTAATTTTGAATTTAATAACGGAAATGAGAGTAAAAG GAGGCATAGCAGTTTTGTGAGGGAGGAGAGGGAGTTTGTGAGTGTAGGGAGGAAAAGTGTGGATATTTATCCGTCGTCTACGGTGGCGGAGAGGAGGAGG GTGGTGGCGGTGCCCGAAAAAGTGAAGGAGAAAGAGTATGTGAGGAGTTTGAAGCCGTCAGTTTGGTTAACGGAACAATTTCCGCTAAAGATTGAGGAGC TATTGCCGTTACTTGATATTTTAGCGAATAAAGTCAAAGCTGTGAGGAGAATGCGTGAATTGCTCACCACTAAATTCCCGGCGGGAACTTTTCCGGTTAA GGTGGCGATCCCGGTGGTCCCGACAGTGAGGGTGGTGATAACATTCACTAAATTTGTCGAGTTACCACCAACTGAACAATTCTACACTCCACTTTCAAGT CCAAGACATTTCGGTGGTCTTGTAGGAAGTAGAGCAGGAATATCAGATGATGATAAAAAATCAGACACACATTATTCATCATTAACACCTTCATCATCGT CTTCGTCGACCTCATGGTTGCGGCGAAACAGCAGCCAGTCTGCAAGCAAGCAGCACCACCGACATAGTTCTTCAGTAGGGCGGCAGCAGCAGCAAGCTGA CCCTTTTGCTATACCAAGTGGATATACATGGACAAGTGTTGATGACAAGTCTAGCAAAATGAAGAAATCCAAATCTGTCAGGAAATCCAAGTAA
AA sequence Show only first row Show all	>Potri.004G013500.1 pacid=42795299 polypeptide=Potri.004G013500.1.p locus=Potri.004G013500 ID=Potri.004G013500.1.v4.1 annot-version=v4.1 MSKSTSTSSSSASTTPSPSIKPESYAHSPVHYAVVLGDHTTLTRLLSTLPRLTDPTKIHTESDSLSQEQLVDKISSLVDRRDVPYRETPLHLAVRLNDLF AAKALAAAGADVSLQNSAGWNPLQEALCRRYSEIALILLRLHHRSAWSKWRRRLPRLTAVLRRMRDFYMEISFHFESSVIPFVNKLAPSDTYKIWKRDAN LRADTTLAGFDGLKIQRADQSFLFLGDGEQTHSIPPGSLLVLNHDERKIFDAFESAGSPMSESDIAGFCSQTSVYRPGMDVTKAELISRTNWRRQEKTES VGEWKAKVYELNNVVFSFRSRKVSENDVAGSEQVLPLELDEDGDGFLVAENPSFLNFEFNNGNESKRRHSSFVREEREFVSVGRKSVDIYPSSTVAERRR VVAVPEKVKEKEYVRSLKPSVWLTEQFPLKIEELLPLLDILANKVKAVRRMRELLTTKFPAGTFPVKVAIPVVPTVRVVITFTKFVELPPTEQFYTPLSS PRHFGGLVGSRAGISDDDKKSDTHYSSLTPSSSSSSTSWLRRNSSQSASKQHHRHSSSVGRQQQQADPFAIPSGYTWTSVDDKSSKMKKSKSVRKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62050			Ankyrin repeat family protein ...		Potri.004G013500 [exp]	0	1
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.002G129600 [exp]	2.00	0.8939
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	3.46	0.9137
AT3G17350			unknown protein		Potri.010G152900 [exp]	3.87	0.9140
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	7.74	0.8959
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	9.16	0.8848	PtrAUX6,Pt-LAX5.1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	10.67	0.8603	Pt-TMKL1.1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	12.04	0.8927
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.014G105101 [exp]	12.60	0.8281
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	14.42	0.8770
AT1G12380			unknown protein		Potri.015G130800 [exp]	18.97	0.8577

Compare expression of checked genes

Potri.004G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.