Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 548 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 527 / 0 Galactosyltransferase family protein (.1) AT4G26940 514 / 0 Galactosyltransferase family protein (.1.2) AT1G11730 505 / 7e-180 Galactosyltransferase family protein (.1) AT1G32930 470 / 9e-166 Galactosyltransferase family protein (.1) AT1G77810 457 / 5e-161 Galactosyltransferase family protein (.1.2) AT1G33430 447 / 5e-157 Galactosyltransferase family protein (.1.2) AT1G22015 433 / 3e-151 DD46 Galactosyltransferase family protein (.1) AT5G53340 239 / 3e-76 Galactosyltransferase family protein (.1.2) AT4G32120 226 / 8e-71 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004200 [exp] 699 / 0 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 548 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 520 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 487 / 2e-172 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 469 / 2e-165 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 462 / 7e-163 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 462 / 8e-163 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 447 / 4e-156 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 259 / 6e-84 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040062 [exp] 546 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006782 [exp] 532 / 0 AT1G05170 512 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 516 / 0 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 511 / 0 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 502 / 4e-178 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 496 / 2e-175 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 490 / 1e-173 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 488 / 8e-173 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 484 / 3e-171 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10039657 [exp] 482 / 7e-170 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G013900.5 pacid=42794897 polypeptide=Potri.004G013900.5.p locus=Potri.004G013900 ID=Potri.004G013900.5.v4.1 annot-version=v4.1 ATGTTAAATAGTAAAACAAAAATGTCAGTGAAGGGTAGAGTAGGAGTTGGAGGAGGAGAGATGGGTTCAAGGAATGCAGTGGTGTCAAGGAATCTGGCTC TTTTGCTTTGTTTTGGCAGCTTCTCTGCTGGGATATTATTCACTAACAGGATTTGGACAGAGCCCGAAAGAACAAATTTAGAATCCGAGAATTGTAATCA GAAGCTTAAGGTTGAAAATCATACATCCATTAACAGTCTAGGGCAAATTTCAAATACTCAGTATGATATCAGTGCCCTAGATAGTAAAATTTCAAATATA GAGATGAAACTAGCAGCTGCTAAGGCAGAGCAGCAATCTTTGTTAAGAGGCGATATTGCATCAGGAAACTTGAAAAGAAAATACTTTATGGTAATTGGAA TCAATACAGCTTTTAGCAGTCGGAAACGGAGGGATTCTGTTCGTACAACTTGGATGCCACAAGGTGAGGCAAGAAAGAAATTGGAGAAGGAGAAGGGTAT AGTCATACGCTTTGTTATAGGTCACAGTTCAACTGCTGGTGGCATTCTTGACAAAGCTATTGAAGCAGAGGAAATGGTGCATGGAGATTTTTTGAGACTG GAACATGTTGAGGGCTACCTGGAACTATCAGCCAAGACAAAGACTTACTTTAGTACCGCTGTTGCTTTGTGGGATGCGGACTTTTATATCAAAGTTGACG ATGATGTTCATGTGAATTTAGCAACATTGGGCACAATCTTAGCTGGACACCGAAAGAAACGTCGGGTTTATGTCGGTTGTATGAAGTCTGGTCCTGTACT TTCTAAAAGGGGAGTGAAATATTACGAACCAGAGTATTGGAAATTCGGAGAAGCTGGAAACAGGTATTTCCGACATGCTACTGGACAACTTTATGCTATA TCAAAGGATTTGGCTACCTATATATCTGAAAACCAGCACATATTGCATAAATATGTCAATGAAGATGTTTCTCTGGGATCTTGGTTTATCGGTTTAGATG TGGAGCACGTTGACGATAAGAGAATCTGTTGTGGTACTCCACCAGATTGTGAGTGGAAGGCTCAGCTTGGCAGTGTCTGTGCTGCTTCATTTGATTGGAA ATGTAGCGGGATTTGCAGGTCCGTTGAGAGAATGGTGGAAGTTCACAGGACATGTGGTGAAGATGTAAATGCTCTAGAGCATGCAAGCTTCTGA
AA sequence Show only first row Show all	>Potri.004G013900.5 pacid=42794897 polypeptide=Potri.004G013900.5.p locus=Potri.004G013900 ID=Potri.004G013900.5.v4.1 annot-version=v4.1 MLNSKTKMSVKGRVGVGGGEMGSRNAVVSRNLALLLCFGSFSAGILFTNRIWTEPERTNLESENCNQKLKVENHTSINSLGQISNTQYDISALDSKISNI EMKLAAAKAEQQSLLRGDIASGNLKRKYFMVIGINTAFSSRKRRDSVRTTWMPQGEARKKLEKEKGIVIRFVIGHSSTAGGILDKAIEAEEMVHGDFLRL EHVEGYLELSAKTKTYFSTAVALWDADFYIKVDDDVHVNLATLGTILAGHRKKRRVYVGCMKSGPVLSKRGVKYYEPEYWKFGEAGNRYFRHATGQLYAI SKDLATYISENQHILHKYVNEDVSLGSWFIGLDVEHVDDKRICCGTPPDCEWKAQLGSVCAASFDWKCSGICRSVERMVEVHRTCGEDVNALEHASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	0	1
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	1.00	0.8452
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	2.00	0.8308
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	5.47	0.7887
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075700 [exp]	7.74	0.7611
AT2G23790			Protein of unknown function (D...		Potri.005G127800 [exp]	8.12	0.7500
AT5G46220			Protein of unknown function (D...		Potri.018G107800 [exp]	8.77	0.7571
AT1G22060			unknown protein		Potri.005G170066 [exp]	15.16	0.7613
AT3G44850			Protein kinase superfamily pro...		Potri.009G151500 [exp]	15.96	0.7388
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.009G062100 [exp]	16.61	0.7011
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	20.19	0.7373

Compare expression of checked genes

Potri.004G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.