Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11720 1460 / 0 ATSS3 starch synthase 3 (.1.2) AT4G18240 417 / 1e-127 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT3G01180 209 / 8e-56 ATSS2 starch synthase 2 (.1) AT5G24300 184 / 2e-48 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 178 / 7e-47 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT5G65685 120 / 1e-28 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 416 / 6e-127 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 358 / 2e-110 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.017G084100 [exp] 205 / 7e-55 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 186 / 3e-49 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 180 / 4e-47 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G009600 [exp] 171 / 6e-44 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G449500 [exp] 163 / 1e-41 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 43 / 3e-05 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006780 [exp] 1576 / 0 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 1552 / 0 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10023319 [exp] 405 / 2e-123 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 404 / 1e-122 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 403 / 2e-122 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 396 / 2e-118 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10018116 [exp] 196 / 3e-52 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 195 / 4e-52 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 192 / 1e-50 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 185 / 3e-48 AT3G01180 928 / 0.0 starch synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF13579 [poplar] [flax] Glyco_trans_4_4 Glycosyl transferase 4-like domain CL0576 [poplar] [flax] STARBD PF16760 [poplar] [flax] CBM53 Starch/carbohydrate-binding module (family 53)
Representative CDS sequence Show only first row Show all	>Potri.004G014100.1 pacid=42794205 polypeptide=Potri.004G014100.1.p locus=Potri.004G014100 ID=Potri.004G014100.1.v4.1 annot-version=v4.1 ATGGAAGTGGCTTTGCTAGTACAAAGTCCATTGAGTTGTAGTGGAAGGGGTGTTTTTAGTGAAAGAAATGGTTTAAAGATTAAACCTTTTCTTGTTGGGT CTTTCCCTCATGTTAGAAGTGGACAACTTTCAAGTCTTAATTCATGGAGGAAGGAGTTTCCAGCAAGTGGAGTTTCATTTCGAATAGCTGCAACTGCTGA TTTTTCTAAGAGGAGACAGAGAAAAATGTCAAATGCTAGGCCTAGAGGCTCTTCTCCGAAGGGATTCACGCCGAAAACACCTGTTGGAACAAGCACCCAG AAGAGAGATTTAGAAAACAATGGAGAGAAAGAGGGTTCAGTTACACCAAAATCTAGTGAGATTGCAGAGGCCAACAAGCAAACACTAGAAACACAGGTTG AGGAGGATGAAGAACTGGCAATTGAACATTCTGGGGAGAAAAAAGTCGACGAAGAAAAGATAGGAGAGGAAGTATCTTTGATGAGTAAAAAGGTGGCTGT TGCTAATGGTAATCAAGTGGTCAAAAATGGAAGTATCAGTAGAGTTGGTAAGGATGTGACCCTGTCAGAGGATAAAATTGCTTTAGAGGGAAGCCAAAAT GATGACTTGAAGAATGATGGTATTGTGAAAGAGAAGAGCATTTCAATTGATGCGAGAAAGACTGAAGATGATTCTCTACAAATAAAATTGAAGTTGGAAA TGGAAGAAAAATTGCGTAAAGAAGAAACTGATAGGCTTGCTGAAGAAAAATTGCGTAAGCAAGAAATTGAGAGGCTTGTTGAGGAAAACTTCTCTAAGGG TAACAAATTGTTTGTCTATCCGCAGATGGTGAAACCCGATGAAGACATAGAAGTGTTCCTTAATAGAAGTCTATCAACCTTGAGTGACGAACCAGATATT TTGATTATGGGAGCATTCAATGACTGGAGATGGAAATCTTTTACCTTTAGGTTGAGCAAGACCCATCTCAATGGGGATTGGTGGTCTTGCCAGGTTCATG TTCCAAAAGAAGCATATAAGATGGACTTTGTGTTCTTCAATGGGCAAGATGTCTATGACAATAATGACAGGAAGGATTTCTACATTCTTGTTGAAGGTGG AATGGATGCATTTGCATTTGATGATTTCTTGCTTGAGGAAAAACGTCGGGAACTGGAGAAACTTGCAAAGGAGCAAGCTGTGAAGGAAAGATTAGCAGAA GAGCAGAGGCGAAGAGAAGCAGAGAAGGCTGCAAGTGAAGCTGATAGAGCACAGGCAAGGGCAGAAATTGAAAAAAGGAGAAGAACATTGCAAGAACTGA TGAAAAAGGCTGCAAGGTCCTTCAATAATGTTTGCCACGTAGAACCTAGTGAGTTCAAAGGTGAGGACACGATCAAGTTATATTATAACAAAAGCTCAGG TCCTCTAGCCCATGCTAATGACCTTTGGGTTCATGGGGGGCATAATAATTGGAAGGATGGATTGTCCATTGTTGAGAGACTTGTCAGCTCTGACAAAAAG GATGGCGATTGGTGGTATGCTAATGTTGTTGTACCTGATCGAGCCTTTGTCCTGGATTGGGTCTTTGCTGATGGTCCACCTCAGAATGCCACTGTGTATG ATAACAATCATCGCCAAGATTTCCATGCTATTGTCCCAAATGGTATTCCTGAAGAATTGTATTGGGTTGAGGAAGAACACCAAATATATAGGAAACTACA GGAAAAGAGGAGGTTAAGAGAGGACGCTATACGTGCCAAGGCTGAGAAAACAGCACGTATTAAAGCTGAAACAAAGGAACAAACTTTGAAAAGGTTTCTG CTGTCACAAAAGCATATAGTTTATACTGAGCCTCTTGATGTTCAGGCTGGAAGCACCGTGACAGTTTTCTATAATCCTGCTAACACCATTCTGAATGGTA AACCTGAAGTTTGGTTCAGAGGTTCATTCAACCGTTGGACCCACCGTAAGGGTCCATTGCCACCTCAGAAAATGTTGCCTGCAGATAATGGCTCTCACGT CAAAGCCACTGTCAAGGTTCCATTGGATGCCTACATGATGGATTTTGTATTCTCTGAGAAGGAAGATGGTGGAATTTTTGACAATAGAGAAGGCATGGAT TATCACATACCAGTGTCTGGAGGAATTGCAAAAGAACCACCGATGCACATTGTGCATATTGCTGTTGAAATGGCCCCAATCGCGAAGGTTGGTGGGCTTG GTGATGTTGTGACTAGTCTCTCCCGTGCAGTTCAAGATTTAAACCACAGTGTGGACATCATTCTTCCAAAGTATGACTGTATGAAGATTAGCCATGTGAA AGATTTGCACTACCAGAGAAGCTATTCCTGGGGTGGGACTGAAATAAAAGTATGGTTTGGGAAGGTGGAAGGCCTTTCTGTCTATTTCTTGGAGCCTCAA AATGGAATGTTTTGGGCAGGTTGCGTATATGGCTGCAAGAATGATGGGGAGAGATTTGGTTTCTTTTGCCATGCAGCCCTTGAATTTTTACAACAAAGTG GATTTCATCCTGATATTATCCATTGCCATGATTGGTCTAGTGCTCCAGTTGCATGGTTGTTTAAGGACCATTATATGCATTATGGTCTTAGTAAATCCCG GGTAGTCTTCACCATTCATAATCTTGAATTTGGGGCAAACAACATTGGGAAAGCTATGGCATATTCTGACAAGGCTACAACTGTATCTCCCACATATTCA AGGGAGATTTCAGGAAATCCTTTAATTGCTTCTCATCTCCACAAGTTCCATGGCATCCTAAATGGAATTGACCCTGATATATGGGACCCTTATAATGATA CATACATTCCTGTACCTTATACTTCCGAGAATGTTGTTGAAGGAAAAAGAACTGCCAAGGAGGCTTTGCAACAAAGGCTTGGTTTGAAAAAGGCTGATCT TCCTCTGGTAGGAATAATTACTCGCTTGACACATCAAAAGGGAATCCATCTCATCAAGCATGCAATTTGGCGCACCTTAGAGCGCGGTGGGCAGGTTGTA CTGCTTGGTTCAGCTCCAGATCCCCGTGTCCAGAATGATTTTGTGAATTTGGCCAACCACTTGCATTCTAGTCACCATGACCGTGCTCGCCTTTGTTTGA CTTATGATGAGCCTCTTTCGCACTTGATATATGCGGGTGCTGATTTCATTCTAGTCCCATCTATTTTTGAGCCTTGTGGACTGACCCAGCTTACTGCTAT GAGATATGGTTCAATAGCTGTTGTTCGAAAAACTGGAGGGCTTTTCGACACTGTGTTTGATGTTGACCATGACAAAGAAAGAGCCAAAGCACAAGGTCTT GAACCAAATGGATTTAACTTTGATGGAGCTGACCCTGCTGGTGTTGATTATGCTCTAAATAGGGCAATCTCTGCCTGGTACGACGGTCGGGATTGGTTTA ACTCGATGTGTAAAAAGGTGATGGAGCAAGACTGGTCTTGGAATAAGCCTGCTCTCGATTACTTGGAGCTTTACCATTCAGCACGCAAGTGA
AA sequence Show only first row Show all	>Potri.004G014100.1 pacid=42794205 polypeptide=Potri.004G014100.1.p locus=Potri.004G014100 ID=Potri.004G014100.1.v4.1 annot-version=v4.1 MEVALLVQSPLSCSGRGVFSERNGLKIKPFLVGSFPHVRSGQLSSLNSWRKEFPASGVSFRIAATADFSKRRQRKMSNARPRGSSPKGFTPKTPVGTSTQ KRDLENNGEKEGSVTPKSSEIAEANKQTLETQVEEDEELAIEHSGEKKVDEEKIGEEVSLMSKKVAVANGNQVVKNGSISRVGKDVTLSEDKIALEGSQN DDLKNDGIVKEKSISIDARKTEDDSLQIKLKLEMEEKLRKEETDRLAEEKLRKQEIERLVEENFSKGNKLFVYPQMVKPDEDIEVFLNRSLSTLSDEPDI LIMGAFNDWRWKSFTFRLSKTHLNGDWWSCQVHVPKEAYKMDFVFFNGQDVYDNNDRKDFYILVEGGMDAFAFDDFLLEEKRRELEKLAKEQAVKERLAE EQRRREAEKAASEADRAQARAEIEKRRRTLQELMKKAARSFNNVCHVEPSEFKGEDTIKLYYNKSSGPLAHANDLWVHGGHNNWKDGLSIVERLVSSDKK DGDWWYANVVVPDRAFVLDWVFADGPPQNATVYDNNHRQDFHAIVPNGIPEELYWVEEEHQIYRKLQEKRRLREDAIRAKAEKTARIKAETKEQTLKRFL LSQKHIVYTEPLDVQAGSTVTVFYNPANTILNGKPEVWFRGSFNRWTHRKGPLPPQKMLPADNGSHVKATVKVPLDAYMMDFVFSEKEDGGIFDNREGMD YHIPVSGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMKISHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQ NGMFWAGCVYGCKNDGERFGFFCHAALEFLQQSGFHPDIIHCHDWSSAPVAWLFKDHYMHYGLSKSRVVFTIHNLEFGANNIGKAMAYSDKATTVSPTYS REISGNPLIASHLHKFHGILNGIDPDIWDPYNDTYIPVPYTSENVVEGKRTAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVV LLGSAPDPRVQNDFVNLANHLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIAVVRKTGGLFDTVFDVDHDKERAKAQGL EPNGFNFDGADPAGVDYALNRAISAWYDGRDWFNSMCKKVMEQDWSWNKPALDYLELYHSARK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	0	1
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.001G094500 [exp]	4.89	0.8390
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	5.47	0.8254
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Potri.006G133500 [exp]	5.91	0.8159
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	9.27	0.8349
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	11.40	0.8136
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	13.07	0.8332
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.011G066700 [exp]	14.14	0.7850
AT5G15940			NAD(P)-binding Rossmann-fold s...		Potri.001G453500 [exp]	18.97	0.7598
AT5G63520			unknown protein		Potri.015G098700 [exp]	24.00	0.7793
AT3G45740			hydrolase family protein / HAD...		Potri.010G216000 [exp]	26.70	0.7873

Compare expression of checked genes

Potri.004G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.