Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 313 / 4e-98 SD2-5 S-domain-2 5 (.1) AT2G19130 295 / 4e-91 S-locus lectin protein kinase family protein (.1) AT5G24080 280 / 7e-89 Protein kinase superfamily protein (.1) AT1G34300 286 / 1e-87 lectin protein kinase family protein (.1) AT4G00340 277 / 2e-84 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 250 / 8e-78 Protein kinase superfamily protein (.1) AT5G60900 236 / 2e-69 RLK1 receptor-like protein kinase 1 (.1) AT5G35370 234 / 2e-68 S-locus lectin protein kinase family protein (.1) AT4G23130 231 / 2e-68 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G00970 229 / 1e-67 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014450 [exp] 748 / 0 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014250 [exp] 742 / 0 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.004G014200 [exp] 718 / 0 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014636 [exp] 671 / 0 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.004G014700 [exp] 560 / 0 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 557 / 0 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 549 / 0 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.011G004000 [exp] 503 / 4e-173 AT4G32300 277 / 2e-82 S-domain-2 5 (.1) Potri.004G061900 [exp] 368 / 9e-118 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 298 / 3e-92 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 298 / 5e-92 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10033748 [exp] 282 / 2e-86 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10043391 [exp] 281 / 4e-86 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028711 [exp] 273 / 6e-85 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 277 / 2e-84 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 274 / 6e-83 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 272 / 4e-82 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10033032 [exp] 260 / 2e-81 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10042266 [exp] 267 / 7e-81 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G014301.1 pacid=42794026 polypeptide=Potri.004G014301.1.p locus=Potri.004G014301 ID=Potri.004G014301.1.v4.1 annot-version=v4.1 ATGTCACTACTGAAGTTGCTTATGCATTTATCTCCTTTCTTGGTTGCTCATTTATTCGTATCAGGAAACACAATTGGATGCAAGGCGTTGACAAGTAACA AGCCAGTTTTTTCTTCAGGACCTGTATACGCTGTGGCAAGATCACCATTAGACGGGATAGCTGTACGTTCTTCAGGACCTGCCGAACCGCCGATAAAAGC ACCAAGCCTTTCCCCACAAGTTAAAAAACCACCAAGCCTTTCGCCACAAGGGATAACGCCACCAAGGCCTTCGCCACAAGGGATAGCGCCACCAAGGCCT TCGCCAGAAATAAGTCCTAGAAGTTCGGCACCAATTATAGCAGCAGTTATATTTAGTTTTGTTGTTATCATTCCTTCTGTAGTCATGCCTTTTATTTTGA GGGCAAGATGGCGTGGGAAGTCTGAACAAGATCCGCAGGATGTGGAAGATCATCATATAAAGCATGTTCCAGGAATGCCTGTCAGGTTCTCATACCAAGA ACTGTACGTTGCAACTAATAATTTCAACGAGAGACTTGGAAGAGGAGGCTTCGGGTCTGTATTCAAAGGAAAATTGGGAGATGGAACACAAATTGCTGTG AAGAGGTTGGAGAAACGAGGCCAAGGAATGAGTGCTTTTTTAGCAGAAGCCGAGGCAATTGGAAGTCTGCACCATTTTAACTTGGTGAGGTTGATTGGAT TTTGCGCAGAGAAATCCTCTAGGCTTTTGGTTTTTGAGTATTTGAGCAATGGATCGTTGGACAATTGGATTTTTATGAATGTACAAGGATCTTTCCTTGA TTGGCAGACCAGGAAGAAGATTATAGTCGACATAGCAAAAGGCCTGGCTTATCTTCATGAAGACTGTCGACATACCATAATACATCTTGATGTAAAACCA CAGAACATTCTTTTGGATTCAAGTTTCCACGCCAAAATCGCTGATTTTGGGTTATCCAAGCTAATCAATAGAGATATGAGCCAGGTTCAAATCTCAATGA GAGGAACACCGGGATATCTTGCTCCAGAATGGCGTCAACCATTAGGTCGTATTACGGTTAAAGTTGACATATATAGCTTCGGAATTGTCCTCCTTGAAAT AGTTTGTGCACGCAGAAATGTAGACCAATCACAACCAGAATCTGCCTTTCATTTGCTTACAATGCTGCAGAAGAAAGCTGATCATCAAGATGGAGTAATA GACATTGTGGAAAATTTGGATGAATACACGCGGAGTGATAGAGAGGAAATAACGAGGATGATAAAGGTTGCTGCTTGGTGTTTGCAAGATGACCCAGAAA GAAGACCTCTCATGTCAACAGTTTTAAAAGTGTTGGAAGGTGTTATGGAGGTAGATTCAAACATCAATTATCGGTTTTCGCATGCAATGATATCTTCTCC AGCTGGTAACAACCATATTTCTTCAGCACCTCCTCCAGCATCTGTTCTTTCCAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G014301.1 pacid=42794026 polypeptide=Potri.004G014301.1.p locus=Potri.004G014301 ID=Potri.004G014301.1.v4.1 annot-version=v4.1 MSLLKLLMHLSPFLVAHLFVSGNTIGCKALTSNKPVFSSGPVYAVARSPLDGIAVRSSGPAEPPIKAPSLSPQVKKPPSLSPQGITPPRPSPQGIAPPRP SPEISPRSSAPIIAAVIFSFVVIIPSVVMPFILRARWRGKSEQDPQDVEDHHIKHVPGMPVRFSYQELYVATNNFNERLGRGGFGSVFKGKLGDGTQIAV KRLEKRGQGMSAFLAEAEAIGSLHHFNLVRLIGFCAEKSSRLLVFEYLSNGSLDNWIFMNVQGSFLDWQTRKKIIVDIAKGLAYLHEDCRHTIIHLDVKP QNILLDSSFHAKIADFGLSKLINRDMSQVQISMRGTPGYLAPEWRQPLGRITVKVDIYSFGIVLLEIVCARRNVDQSQPESAFHLLTMLQKKADHQDGVI DIVENLDEYTRSDREEITRMIKVAAWCLQDDPERRPLMSTVLKVLEGVMEVDSNINYRFSHAMISSPAGNNHISSAPPPASVLSNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	0	1
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	2.00	0.9647
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	2.00	0.9681
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.002G160650 [exp]	3.00	0.9605
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	3.46	0.9594
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177900 [exp]	4.69	0.9521
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	5.19	0.9551
AT5G63520			unknown protein		Potri.011G010100 [exp]	6.00	0.9338
AT1G13480			Protein of unknown function (D...		Potri.008G109400 [exp]	8.12	0.9349
AT5G05200			Protein kinase superfamily pro...		Potri.019G061300 [exp]	9.16	0.9569
AT4G33490			Eukaryotic aspartyl protease f...		Potri.005G069600 [exp]	9.16	0.9515

Compare expression of checked genes

Potri.004G014301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.