Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 316 / 7e-99 SD2-5 S-domain-2 5 (.1) AT2G19130 299 / 3e-92 S-locus lectin protein kinase family protein (.1) AT5G24080 277 / 1e-87 Protein kinase superfamily protein (.1) AT1G34300 284 / 1e-86 lectin protein kinase family protein (.1) AT4G00340 276 / 1e-83 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 253 / 2e-78 Protein kinase superfamily protein (.1) AT5G60900 240 / 8e-71 RLK1 receptor-like protein kinase 1 (.1) AT1G56120 241 / 1e-69 Leucine-rich repeat transmembrane protein kinase (.1) AT4G23130 235 / 1e-69 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G00970 233 / 8e-69 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014250 [exp] 752 / 0 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.004G014200 [exp] 750 / 0 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014301 [exp] 724 / 0 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014636 [exp] 660 / 0 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.004G014700 [exp] 588 / 0 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 587 / 0 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 576 / 0 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.011G004000 [exp] 527 / 0 AT4G32300 277 / 2e-82 S-domain-2 5 (.1) Potri.004G061900 [exp] 373 / 3e-119 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 301 / 6e-93 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 300 / 1e-92 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 293 / 3e-90 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10033748 [exp] 287 / 4e-88 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 277 / 3e-84 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 277 / 1e-83 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10028711 [exp] 270 / 2e-83 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10042266 [exp] 273 / 1e-82 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 270 / 4e-81 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033032 [exp] 258 / 3e-80 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G014450.2 pacid=42794975 polypeptide=Potri.004G014450.2.p locus=Potri.004G014450 ID=Potri.004G014450.2.v4.1 annot-version=v4.1 ATGGAGGACAAAGTGCTTCACCAACCCACTAAGGATAATGGGGAAGGTAGTGCTCCACTAGTCCATGTAAAGGGTGATCATGGGGGAGATAATGCTCCAC TATGCCCTGAAATTAGGGGATTATGGACTGGTACCTTCAGTTGTGCATCATCCGATTACCAAATTGTCTTCTGCGCAGGAAACACAACTGAATACAAGTC CACGACAAGTAACATGACAGTTGTTTCTTCAGGACCTGCCGAACCGCCGCCATCAACAACTGTGATAAGAGCACCAAGCCTTTCCCCACCGCCATCACCA TCTGTTAAAACACCACCAAGCCCTTCGCCACAAGGGATAACGCCACCAAGCCCTTCCCCACAAGAGATAACACCAAGGCCTTCTCCAGAAATAAGGCGTA AAACTGCAAGAAGTTTGGTACCAATTATAGCAGGAGTTATAGGCAGTGTCCTTCTTATCGTTTCTTTTGTAGTGATTTTTATTTCGAGGGCAAGATGGCG TGGGAAGTCTGAACAAGATCCGCAGGATGTGGAAGATGATCATATAAAGCATGTTCCAGGAATGCCTGTCAGGTTCTCATACCAAGAACTGTACGTGGCA ACTGATAATTTCAACGAGAGACTTGGAAGAGGGGGCTTCGGGTCTGTATTCAAAGGAAAATTGGGAGATGGAACACAAATTGCTGTGAAGAGGTTGGAGA AACTAGGCCAAGGAATGAGTGCTTTTTTAGCAGAAGCTGAGGCAATTGGAAGTCTGCACCATTTTAACTTGGTGAGGTTGATTGGATTTTGCGCAGAGAA ATCCTCTAGGCTTTTGGTTTTTGAGTATTTGAGCAATGGATCGTTGGATAATTGGATTTTTATGAATGTACAAAGATCTTTCCTTGATTGGCAGACCAGG AAGAAGATTATACTCGACATAGCAAAAGGCCTGGCTTATCTTCATGAAGACTGTCGACATACCATAATACATCTTGATGTAAAACCACAGAACATTCTTT TGGATTCAAGTTTCCACGCCAAAATCGCTGATTTTGGGTTATCCAAGCTAATCAATAGAGATATGAGCCAGGTTCAAATCTCAATGAGAGGAACACCGGG ATATCTTGCTCCAGAATGGCGTCAACCATTAGGTCGTATTACGGTGAAAGTTGACATATATAGCTTCGGAATTGTCCTCCTTGAAATAGTTTGTGCACGC AGAAATGCAGACCAATCACAACCAGAATCTGCCTTTCATTTGCTTACAATGTTGCAGAAGAAAGCTGATCAAGATAGAGTAATAGACATTGTGGAAAATT TGGATGAATACACGCGGAGTGATAGAGAGGAAATAACGAGGATGATAAAGGTTGCTGCTTGGTGTTTGCAAGATGACCCAGAAAGAAGACCTCTCATGTC AACAGTTTTAAAAGTGCTGGAAGGTGTTATGGAGGTAGATTCAAACATCAATTATCGGTTTTCGCATGCAATGGTATCTTCTCCAGCTGGTAACAACCAT ATTTCTTCACCACCTCCTCCAGCATCTGTTCTTTCTAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G014450.2 pacid=42794975 polypeptide=Potri.004G014450.2.p locus=Potri.004G014450 ID=Potri.004G014450.2.v4.1 annot-version=v4.1 MEDKVLHQPTKDNGEGSAPLVHVKGDHGGDNAPLCPEIRGLWTGTFSCASSDYQIVFCAGNTTEYKSTTSNMTVVSSGPAEPPPSTTVIRAPSLSPPPSP SVKTPPSPSPQGITPPSPSPQEITPRPSPEIRRKTARSLVPIIAGVIGSVLLIVSFVVIFISRARWRGKSEQDPQDVEDDHIKHVPGMPVRFSYQELYVA TDNFNERLGRGGFGSVFKGKLGDGTQIAVKRLEKLGQGMSAFLAEAEAIGSLHHFNLVRLIGFCAEKSSRLLVFEYLSNGSLDNWIFMNVQRSFLDWQTR KKIILDIAKGLAYLHEDCRHTIIHLDVKPQNILLDSSFHAKIADFGLSKLINRDMSQVQISMRGTPGYLAPEWRQPLGRITVKVDIYSFGIVLLEIVCAR RNADQSQPESAFHLLTMLQKKADQDRVIDIVENLDEYTRSDREEITRMIKVAAWCLQDDPERRPLMSTVLKVLEGVMEVDSNINYRFSHAMVSSPAGNNH ISSPPPPASVLSNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014450 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	1.00	0.9295
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	2.00	0.9063
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	3.00	0.8619
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014351 [exp]	3.16	0.8395
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	6.63	0.8395
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	13.49	0.8196
AT4G31860			Protein phosphatase 2C family ...		Potri.006G265100 [exp]	18.43	0.8114
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	18.46	0.8096
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	20.49	0.7659	PtrPDR12
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Potri.009G041900 [exp]	20.61	0.7876

Compare expression of checked genes

Potri.004G014450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.