Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 293 / 2e-99 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 289 / 6e-98 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 275 / 2e-92 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 267 / 5e-90 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 261 / 3e-87 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G38660 257 / 7e-85 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 265 / 2e-84 PR5K PR5-like receptor kinase (.1) AT1G19320 239 / 4e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 238 / 1e-78 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT5G24620 234 / 4e-75 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014700 [exp] 374 / 5e-127 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 373 / 2e-126 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.002G020500 [exp] 361 / 3e-126 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 349 / 2e-121 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G014250 [exp] 344 / 8e-115 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.011G003900 [exp] 333 / 8e-111 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.004G014351 [exp] 312 / 3e-108 AT1G75800 223 / 2e-72 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G014200 [exp] 319 / 2e-105 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.005G112700 [exp] 289 / 2e-98 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034534 [exp] 294 / 1e-99 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 291 / 1e-98 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 291 / 3e-98 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 271 / 3e-91 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 259 / 3e-86 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023897 [exp] 249 / 2e-83 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 246 / 6e-81 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 244 / 3e-80 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10025055 [exp] 239 / 9e-79 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 240 / 2e-78 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.004G014574.1 pacid=42795400 polypeptide=Potri.004G014574.1.p locus=Potri.004G014574 ID=Potri.004G014574.1.v4.1 annot-version=v4.1 ATGTCTGTGATAAAATTACTTGTGCATTTATCTTCTTTCCTGGTCGCTCATTTATTCATATCAGGTGCTGTTTCAACAACATTTACAATAACAAACAAGT GTAGCTACACAGTTTGGCCAGGCATTTACTCAAGTGCAGGTTCAGCAGCTCTCTCCCCAACTGGTTTTTCCCTTGAAAAGAATGAGTCGAAGACTTTAAC AGCACCGGATTCTTGGTCTGGACGGTTTTGGGGCCGCACGTACTGCACCGAAGACTCGTCAGGAAATTTCTCCTGCATCTCAGGCGATTGTGGCTCCGGC AAACTAGAATGTTTAGGCAACGGTAGTGCTCCTCCTGTAACGTTGGCAGAGTTTACGATTGGTGGTTTTGATGGCCTTGATTATTTTGATGTTAGTCTTG TTGATGGCTTCAACCTGCCTTTGCTTGTTGTGCCTTCTCGTCAGAACTGTACAAGCACTGGATGTGTGGTGGATTTGAACGGCGTTTGTCCTCCAGAACT TACGGTTAATAGTTCTGATGGGAAGATTGCGGGGTGCAGCAGCGCGTGTGAGGCCTTTAATTCACCGCAATATTGTTGTACTGGTGAATATGAAACACCT TCGACTTGCAAGCCTACTTCTTATTCTCAGAATTTTAAGAAAAAGTGTCCAAGCACTTACACCTATCCTTATGACGATAACACTGCTACCTTCAGTTGTG CATCATCCGATTACCAAATTGTCTTCTGTGCAGGTAAATTTACCATTTTTCAATCTTGTAGTTTTTTGAGTTTGATATTTTGTTTTTAA
AA sequence Show only first row Show all	>Potri.004G014574.1 pacid=42795400 polypeptide=Potri.004G014574.1.p locus=Potri.004G014574 ID=Potri.004G014574.1.v4.1 annot-version=v4.1 MSVIKLLVHLSSFLVAHLFISGAVSTTFTITNKCSYTVWPGIYSSAGSAALSPTGFSLEKNESKTLTAPDSWSGRFWGRTYCTEDSSGNFSCISGDCGSG KLECLGNGSAPPVTLAEFTIGGFDGLDYFDVSLVDGFNLPLLVVPSRQNCTSTGCVVDLNGVCPPELTVNSSDGKIAGCSSACEAFNSPQYCCTGEYETP STCKPTSYSQNFKKKCPSTYTYPYDDNTATFSCASSDYQIVFCAGKFTIFQSCSFLSLIFCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	5.38	0.8017
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	7.74	0.8302
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	9.64	0.8543
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	10.72	0.8437
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	10.95	0.8011
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	11.57	0.8507
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	12.36	0.8313
AT1G17450			B-block binding subunit of TFI...		Potri.001G170001 [exp]	12.40	0.8079
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	19.97	0.8083
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	23.02	0.7801

Compare expression of checked genes

Potri.004G014574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.