Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 301 / 7e-96 SD2-5 S-domain-2 5 (.1) AT2G19130 297 / 4e-94 S-locus lectin protein kinase family protein (.1) AT5G24080 277 / 5e-90 Protein kinase superfamily protein (.1) AT1G34300 279 / 3e-87 lectin protein kinase family protein (.1) AT4G00340 277 / 1e-86 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 243 / 3e-77 Protein kinase superfamily protein (.1) AT4G23130 230 / 4e-70 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT5G60900 231 / 8e-70 RLK1 receptor-like protein kinase 1 (.1) AT2G23950 228 / 1e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G56120 233 / 2e-69 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014301 [exp] 672 / 0 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014450 [exp] 662 / 0 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014200 [exp] 660 / 0 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014250 [exp] 652 / 0 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.004G014700 [exp] 528 / 0 AT5G38280 457 / 3e-153 PR5-like receptor kinase (.1) Potri.004G014512 [exp] 525 / 0 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 518 / 0 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.011G004000 [exp] 474 / 2e-164 AT4G32300 277 / 2e-82 S-domain-2 5 (.1) Potri.004G061900 [exp] 364 / 2e-118 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 289 / 5e-91 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 289 / 8e-91 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 284 / 2e-89 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10033748 [exp] 280 / 3e-88 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 277 / 1e-86 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 271 / 4e-84 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10042266 [exp] 270 / 5e-84 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 263 / 3e-83 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10006052 [exp] 264 / 2e-81 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033032 [exp] 254 / 3e-81 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G014636.1 pacid=42794113 polypeptide=Potri.004G014636.1.p locus=Potri.004G014636 ID=Potri.004G014636.1.v4.1 annot-version=v4.1 ATGCCTGTCAGGTTCTCATACCAAGAACTATACGTTGCAACTGATAATTTCAACGAGAGACTTGGAAGAGGAGGCTTCGGGTCTGTATTCAAAGGAAAAT TGGGAGATGGAACACAAATTGCTGTGAAGAGGTTGGAGAAACGAGGCCAAGGAATGAGTGCTTTTTTAGCAGAAGCCGAGGCAATTGGAAGTCTGCACCA TTTTAACTTGGTGAGGTTGATTGGATTTTGCGCAGAGAAATCCTCTAGGCTTTTGGTTTTTGAGTATTTGAGCAACGGATCGTTGGATAATTGGATTTTT ACGAATGTAAAAAAAAATTTCCTTGATTGGCAGACCAGGAAGAAGATTATACTCGACATAGCAAAAGGGCTGGCTTATCTTCACGAAGACTGTCGACATA CCATAATACATCTTGATGTAAAACCACAGAACATTCTTTTGGATTCAAGTTTCCATGCCAAAATCGCTGATTTTGGGTTATCCAAGCTAATCAATAGAGA TATGAGCCAGGTTCAAATCTCAATGAGAGGAACACCGGGATATCTTGCTCCAGAATGGCGTCAACCATTAGGTCGTATTACAGTAAAAGTTGACATATAT AGCTTCGGAATTGTCCTCCTTGAAATAGTTTGTGCACGCAGAAATGCAGACCAATCACAACCAGAATCTGCCTTTCATTTGCTTACAATGTTGCAGAAGA AAGCTGATCATCAAGATGGAGTAATAGACATTGTGGAAAATTTGGATGAATACACGCGGAGTGATAGAGAGGAAATAACGAGGATGATAAAGGTTGCTGC TTGGTGTTTGCAAGATGACCCAGAAAGAAGACCTCTCATGTCAACAGTTTTAAAAGTGCTGGAAGGTGTTATGGAGGTAGATTCAAACATTAATTATCGG TTTTCGCATGCAATGATATCTTCTCCAGCTGGTAACAACCATATTTCTTCAGCAGCACCTCCAGCATCTGTTCTTTCCAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G014636.1 pacid=42794113 polypeptide=Potri.004G014636.1.p locus=Potri.004G014636 ID=Potri.004G014636.1.v4.1 annot-version=v4.1 MPVRFSYQELYVATDNFNERLGRGGFGSVFKGKLGDGTQIAVKRLEKRGQGMSAFLAEAEAIGSLHHFNLVRLIGFCAEKSSRLLVFEYLSNGSLDNWIF TNVKKNFLDWQTRKKIILDIAKGLAYLHEDCRHTIIHLDVKPQNILLDSSFHAKIADFGLSKLINRDMSQVQISMRGTPGYLAPEWRQPLGRITVKVDIY SFGIVLLEIVCARRNADQSQPESAFHLLTMLQKKADHQDGVIDIVENLDEYTRSDREEITRMIKVAAWCLQDDPERRPLMSTVLKVLEGVMEVDSNINYR FSHAMISSPAGNNHISSAAPPASVLSNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	1.00	0.9260
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	2.44	0.9006
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	5.00	0.8893
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027400 [exp]	5.09	0.8434
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	5.19	0.8578
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	7.34	0.8844
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	7.48	0.8725
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	12.24	0.8566
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	12.24	0.8098
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	12.36	0.8313

Compare expression of checked genes

Potri.004G014636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.