Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 458 / 2e-153 PR5K PR5-like receptor kinase (.1) AT1G70250 427 / 7e-140 receptor serine/threonine kinase, putative (.1) AT4G18250 383 / 2e-122 receptor serine/threonine kinase, putative (.1) AT4G32300 320 / 1e-98 SD2-5 S-domain-2 5 (.1) AT5G24080 294 / 1e-92 Protein kinase superfamily protein (.1) AT1G20030 286 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 285 / 9e-91 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 278 / 1e-88 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G34300 289 / 8e-87 lectin protein kinase family protein (.1) AT2G17860 263 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014512 [exp] 1215 / 0 AT5G38280 469 / 1e-157 PR5-like receptor kinase (.1) Potri.011G003900 [exp] 1031 / 0 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.004G014250 [exp] 806 / 0 AT1G70250 364 / 5e-115 receptor serine/threonine kinase, putative (.1) Potri.004G014200 [exp] 793 / 0 AT5G38280 392 / 5e-128 PR5-like receptor kinase (.1) Potri.004G014450 [exp] 570 / 0 AT4G32300 316 / 9e-99 S-domain-2 5 (.1) Potri.004G014301 [exp] 565 / 0 AT4G32300 312 / 9e-98 S-domain-2 5 (.1) Potri.004G014636 [exp] 528 / 0 AT4G32300 300 / 3e-95 S-domain-2 5 (.1) Potri.011G004000 [exp] 505 / 1e-171 AT4G32300 277 / 2e-82 S-domain-2 5 (.1) Potri.004G014574 [exp] 378 / 4e-128 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 311 / 5e-95 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 307 / 1e-93 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 300 / 4e-91 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10017265 [exp] 285 / 1e-90 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 283 / 2e-90 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 281 / 2e-89 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033748 [exp] 289 / 3e-87 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 284 / 3e-87 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10028448 [exp] 267 / 1e-84 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10039315 [exp] 283 / 2e-84 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.004G014700.3 pacid=42796433 polypeptide=Potri.004G014700.3.p locus=Potri.004G014700 ID=Potri.004G014700.3.v4.1 annot-version=v4.1 ATGTCTGTGATAATATTACTAGTGCATTTATCTTCTTTCTTGGTCGCTCATTTATTCATATCAGCAGGTGTTGTTTCAACAACATTTACAATAACAAACA AGTGTAACTACACGGTTTGGCCAGGCATTTCCTCACAATCAGGTTCAGCAGCTCTCTCCACAACTGGTTTTTCCCTTGAAAAGAATGAGTCAAAGACCTT AACAGCGCCGGATTCTTGGACTGGACGGTTTTGGGGCCGCACGTACTGCACCGAAGACTCGTCAGGAAATTTCTCCTGCATCTCAGGCGATTGTGGCTCC GGAAAACTAGAATGTTCAGGCAACGGTGGTGCTCTTCCTGTGACGTTGGCAGAGTTTTCGCTTCGTGGTTTTAATGGCCTTGATTTTTTTGATGTTAGTC TTGTTGATGGCTTCAACCTGCCTTTGCTTGTTGTGCCTTCTCGTCAGAACTGTACAAGCACTGGATGTGTGGCGGATTTGAACGAATCATGTCCGTCAGA GCTTAGGGTTACCACTAGTACAGAAGGCAAGACTGCGGCATGCATGAGCGCGTGCCAAGTGACTAAGTTGTCGATGTTTTGTTGTACTAGTAATGCTACA TGCAAGCCTTCTTTGTATTCTCAATTCTTCAAGAATGCCTGTCCACAAGCTTACAGCTATGCTTATGATGATCAAACTAGCACCTTCACTTGTGCATCCA CCGATTATCAAGTTACATTCTGCCCAGGCAACACAACAGTTATTACAGAAAACAATTCTCGTCCATCACCAGGGGAGATAGCACCAATTCCTCCACCAGA AATAAGGCCTAATACCACTTCAAGAAGACATTGGGTGCCAATTATAGCAGGAATTGTGGGTGGTGTTCTTGCCATCATTTCTTTTGTAGTTATTATTGTT TGGAGGGTTAGGTTGAGCAAGTCTAATGATACTGAGGAGGATGTGGAAGATGATTATATAAAGCAAGTTCCAGGAATGCCTGTCAGGTTTTCGTATGAAG ATCTACGCGTTGCAACCAATGATTTCAAGGAAACACTAGGAAGAGGAGGCTTCGGGTCTGTATTCAAAGGAGTACTTGCAGATGGAACAGGAATTGCTGT GAAGCGTTTGGATAAATTAGGCCAAGGAAAGAGGGCGTTTTTAGCAGAAGTTGAGACGATTGGAAGTGTGCACCATTTTAACTTGGTAAGGTTGATAGGA TTTTGTGCAGAGAAATCGTATAGGCTTTTAGTATATGAGTACATGAGTAACAGTTCATTGGACAATTGGATTTTTAAGAAAGTACAAGGATCTTCCCTGG ATTGGCAGACACGAAAGAAGATTATACTTGACATAGCAAAGGGGATGGCGTATCTTCATGAAGAATGCCGGCAGACCATAATGCATCTGGATATAAAGCC GCAGAACATACTCTTAGATCCAAATTTCAATGCCAAAATCTCTGACTTCGGGCTATCCAAGCTGATTGATAGGGAGATGAGCCAAGTTCAGCTCTCAATG AGAGGAACCCCTGGATATCTTGCTCCAGAATGGCATCAAGAATTAGGTCGCATTACAGTAAAAGTTGATGTATACAGCTTTGGAATTGTTCTCCTGGAAG TAGTTTGTGCACGCAGAAGCGTTGATCACTCACAACCAGAGTCTGCCTTCCATTTGCTTAGAATGTTGCAGAACAAAGCTGAATACATTTTGAAATTTTT AGACGAATATATGCAGAGTGATAGAGATGAAATTATCAGGATGATAAAGATTGCTGCTTGGTGTTTGCAAGATGATCCAGAAAAAAGGCCTCTCATGTCA ACAGTTGTAAAGGTGTTGGAGGGTGTAATGGAGGTAGATTCAAACCTGGTGTATAAGTTTTCACATGCATTGGCACCACCTCCTGTTGCTGATGACTATA TTCTTTCAGCACCGCCACCAGCATCAGTTCTTTCTAATCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G014700.3 pacid=42796433 polypeptide=Potri.004G014700.3.p locus=Potri.004G014700 ID=Potri.004G014700.3.v4.1 annot-version=v4.1 MSVIILLVHLSSFLVAHLFISAGVVSTTFTITNKCNYTVWPGISSQSGSAALSTTGFSLEKNESKTLTAPDSWTGRFWGRTYCTEDSSGNFSCISGDCGS GKLECSGNGGALPVTLAEFSLRGFNGLDFFDVSLVDGFNLPLLVVPSRQNCTSTGCVADLNESCPSELRVTTSTEGKTAACMSACQVTKLSMFCCTSNAT CKPSLYSQFFKNACPQAYSYAYDDQTSTFTCASTDYQVTFCPGNTTVITENNSRPSPGEIAPIPPPEIRPNTTSRRHWVPIIAGIVGGVLAIISFVVIIV WRVRLSKSNDTEEDVEDDYIKQVPGMPVRFSYEDLRVATNDFKETLGRGGFGSVFKGVLADGTGIAVKRLDKLGQGKRAFLAEVETIGSVHHFNLVRLIG FCAEKSYRLLVYEYMSNSSLDNWIFKKVQGSSLDWQTRKKIILDIAKGMAYLHEECRQTIMHLDIKPQNILLDPNFNAKISDFGLSKLIDREMSQVQLSM RGTPGYLAPEWHQELGRITVKVDVYSFGIVLLEVVCARRSVDHSQPESAFHLLRMLQNKAEYILKFLDEYMQSDRDEIIRMIKIAAWCLQDDPEKRPLMS TVVKVLEGVMEVDSNLVYKFSHALAPPPVADDYILSAPPPASVLSNPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	1.00	0.9802
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	3.16	0.7646
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	4.24	0.8084
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	6.32	0.7430
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	6.48	0.8006
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	12.00	0.7580
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	15.58	0.7378
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	17.49	0.7105
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G110901 [exp]	20.66	0.6509
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	22.13	0.6872

Compare expression of checked genes

Potri.004G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.