Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04670 1162 / 0 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G18610 120 / 7e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 103 / 1e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 94 / 2e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G48180 87 / 4e-18 NSP5 nitrile specifier protein 5 (.1) AT3G07720 82 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 80 / 3e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G05420 80 / 5e-15 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 77 / 4e-14 ACBP5 acyl-CoA binding protein 5 (.1) AT5G04420 76 / 5e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008200 [exp] 125 / 2e-29 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 121 / 5e-28 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 113 / 1e-25 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 111 / 4e-25 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G214900 [exp] 86 / 9e-17 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 84 / 3e-16 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G026900 [exp] 81 / 2e-15 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 81 / 2e-15 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 78 / 1e-14 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002756 [exp] 1208 / 0 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10016343 [exp] 597 / 0 AT4G04670 625 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10017860 [exp] 117 / 5e-27 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 102 / 6e-22 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 96 / 4e-20 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043420 [exp] 83 / 7e-16 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10017457 [exp] 82 / 1e-15 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10031497 [exp] 81 / 3e-15 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 81 / 4e-15 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10029902 [exp] 79 / 2e-14 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02475 [poplar] [flax] Met_10 Met-10+ like-protein CL0063 [poplar] [flax] PF02676 [poplar] [flax] TYW3 Methyltransferase TYW3 CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.004G015200.4 pacid=42796670 polypeptide=Potri.004G015200.4.p locus=Potri.004G015200 ID=Potri.004G015200.4.v4.1 annot-version=v4.1 ATGGAGTTTGAGAAGAGAAAAGCAGCAACGTTAAGCTCACTGGCATCCTCAAAGACAGATAAGTCACCAAAAGGAACGGTAGACACCCACTTAATCCCAC TCATCAACACCATCAACTCTCACCCTTCTTACTTCACCACAAGTTCCTGCTCCGGCCGTATCTCTATCCTCTCCCAACCGAAATGGAACCCAACACCACC CACCAGTAAGAAGAAAGCACGTGGAGGATCCTGGCTCTTCATCTCCCACGACCTGGCCAATCCCAACTCTCTCCTCCCCCTGCTCTTCCCCTCTGAGTCG ACCGAGTTTACCACTGAGTCTGCCAGTTCAGCAGATGGGCCCTCCGAATCAGCAGCTGGTTTGGTAACCGAGTTGGTGTTCCGGTTCGAGCCATTGATTA TTGCTGTGGAGTGTAGAGACATTGAAGCTGCACAATTTTTGGTGTCTTTTGCTATAAAGAGTGGGTTTAGAGAGTCAGGGATTACAAGTGCTAATAACAA GAGGGTTATTGTGGGGATCAGGTGTTCTATAAGAATGGAGGTCCCTTTAGGTGATAGTGATAGGATTTTGGTGTCAGAAGAGTATGTGAAGTTTCTTGTT GACGTGGCGAATCAGAAAATGGAAGCTAACTGGAAGAGAACTCAAGGGTTTTTGAGTGGTTTAATAGACAATGGGTTTCAGAGGCATACAGTTTCAGAGA ATGGTGAGCGTCGAGATGGGGATGATGATCAGTCGGAGAGAACAGCAAATGGGGATGCTCATATTGGGATGGTAGGAGGAGGAGAAAAGGCTGCTGATTG CAGTTTACCTGTTTCTTCGATCCTAGTTGCTGGTGAATCTGTAGAGAAGCTTTTCCTTTGGGGCCACTCTGCTTGTGTATTGGATAATGGAAGCAATAAA AGTGTTCTGGTATTTGGTGGTTTTGGAGGGATTGGAAGGCATGCCCGGAGAAATGATTGTTTTTTGCTTGATCCGTTCAATGGCAAGTTAAAAGCAAATG ATGTTGAGGGTGCACCATCTCCGCGATTGGGTCACACGGCTTCTTTGGTTGCTGATTTAGTTTTTATTATTGGAGGCAGAGCTGATCCTTCTAGCATTCT GAATGATGTATGGGTTCTAAATACAGCTAATATGGAATGGAAGCTGATACAATGCACTGGCAGTGTTTTCTCTTCAAGGCATCGGCATTCAGCAGCAGTA GTTGGCTCAAACATATATGTATATGGTGGGCTTAACAACAATGATACAATCTTATCATCCTTGCATGTTTTTAACACTGGAAATCTGCAATGGAAAGAAG TCTTGGGTGATGGGGAACGACCATGTGCTCGTCATTCTCACTCAATGCTAGCATATGGGTCTAAAGTATTCGTGTTTGGAGGATACAATGGTGAGAGAGC TCTTGGAGATTTATACAGTTTTGATGTCCAAACATGCATGTGGAAGTTAGAAAAGACAGCTGGAAGAAGTCCACATGCTAGATTTTCCCACTCAATGTTT GTCTACAAGGATTTTCTTGGAGTCATTGGTGGTTGCCCTGTTGGACAACATTTCCAAGAGTTGGCATTGCTTGATCTGCAGTCCCATACATGGAAACAAG TAACACTTGATTATATTGGCAAAGAGTTGCTTGTGCGAACTACAGCCAATGTTGTTGGTGATGATCTTGTTATCATTGGGGGTGGTGCAGCTTGTTATGC ATTTGGAACAAAATTCAGCAAGCCATTTAAAGTCAACTTGCTTCCACTGGTACCTTTAGGAGACAAACTTATGCCAACAGAGAAGAATGTCAACTTTAGA GTTTCTCATGCTGAAAATGCAGAGGCTTTAACTCAGAGTCCTGTCATGAACTTTGAGGCTGAGAAACATCAGTTGGTTTCTTATAACCGGGTACTAAAAC TTGAAAAGAAGTATGCGAAAATGGGGAAAGACATACTGAAGAATTTTGGATGGTTAGATCTTGGGAGGAAGGTTTATACTAAGGAGGATGGGTTACATAT TTGTTTTCCTATCACAGAAAAATTCTCTGCCATGTTTCTGAAAAAGCATGATCAGGATGTGGATGTGTTTGAACAGGGGAATGATACTTTTGTATGTAAA CTATTTACAGGAGGAGGAATTTTGTTAAATGAGGTGTCCTGTTCAACAGCCTTGAACTTCCTTAAGAAATGTGGTGCCACTAATTTAGCAAATGAGGTTG GTGAAGTTAGAAAATCTTCCAAATCTCCCTTTCAAACAATGAATGAATCGATTGCCTTGTTGATTAAACAGAAAGACCTAGCAGAAACACTATTAGAGCA GCTGCCAAACAGGTGGGAACGACTTGGGGATATTGTGGTGCTTCCAGCAACATCCTTCAAGGATCCAATATGGGACTCAATCAGCAAGGAGCTTTGGCCT ATCGTAGCCAAATCACTTAATACTCGCCGTGTTGCTCGCCAAGGGCGAGTTGCATCCACTGGAACAAGGGACAGTACTTTGGAGATTCTGGTAGGAGATA ATGGGTGGGTTGATCATCGAGAAAATGGAATTCTCTATTCCTTTGATGCTACCAAGTGCATGTTCTCCTGGGGTAATCTTTCTGAGAAGCTTCGTATGGG AAATCTGGAGTGCAAAGATGAGGTTATAGTGGATTTATTTGCTGGAATAGGATATTTCACATTGCCATTTCTTGTCAGGGCCAAAGCAAAACTAGTTTAT GCTTGTGAATGGAATCCTCATGCTGTTGAGGCACTCAGACGTAATCTTGAAGTAAATTCTGTCTCTGATCGATGTATTGTACTTGAAGGAGATAATAGGA TGACAGCTCCTAAGGGAATTGCTAATCGAGTTTGTCTTGGTCTTCTTCCAACAAGTGAGGACAGTTGGGCTACTGCTGTTAGGGCATTAAGGAGCGAGGG TGGGATGTTACATGTGCACGGGAATGTGAAGGACTCACAGGAGTCTTTGTGGACCGCACATGTTTTGAAATCTATTGATGAAATAGCTAGATTCGAAGGT CATTGTTGGGAGGTCTCAATAGAACATGTGGAACGAGTAAAATGGTATGCCCCTCACATCCGCCACCTAGTTGCAGATGTGAGGTGCAGCAGCTTCTAA
AA sequence Show only first row Show all	>Potri.004G015200.4 pacid=42796670 polypeptide=Potri.004G015200.4.p locus=Potri.004G015200 ID=Potri.004G015200.4.v4.1 annot-version=v4.1 MEFEKRKAATLSSLASSKTDKSPKGTVDTHLIPLINTINSHPSYFTTSSCSGRISILSQPKWNPTPPTSKKKARGGSWLFISHDLANPNSLLPLLFPSES TEFTTESASSADGPSESAAGLVTELVFRFEPLIIAVECRDIEAAQFLVSFAIKSGFRESGITSANNKRVIVGIRCSIRMEVPLGDSDRILVSEEYVKFLV DVANQKMEANWKRTQGFLSGLIDNGFQRHTVSENGERRDGDDDQSERTANGDAHIGMVGGGEKAADCSLPVSSILVAGESVEKLFLWGHSACVLDNGSNK SVLVFGGFGGIGRHARRNDCFLLDPFNGKLKANDVEGAPSPRLGHTASLVADLVFIIGGRADPSSILNDVWVLNTANMEWKLIQCTGSVFSSRHRHSAAV VGSNIYVYGGLNNNDTILSSLHVFNTGNLQWKEVLGDGERPCARHSHSMLAYGSKVFVFGGYNGERALGDLYSFDVQTCMWKLEKTAGRSPHARFSHSMF VYKDFLGVIGGCPVGQHFQELALLDLQSHTWKQVTLDYIGKELLVRTTANVVGDDLVIIGGGAACYAFGTKFSKPFKVNLLPLVPLGDKLMPTEKNVNFR VSHAENAEALTQSPVMNFEAEKHQLVSYNRVLKLEKKYAKMGKDILKNFGWLDLGRKVYTKEDGLHICFPITEKFSAMFLKKHDQDVDVFEQGNDTFVCK LFTGGGILLNEVSCSTALNFLKKCGATNLANEVGEVRKSSKSPFQTMNESIALLIKQKDLAETLLEQLPNRWERLGDIVVLPATSFKDPIWDSISKELWP IVAKSLNTRRVARQGRVASTGTRDSTLEILVGDNGWVDHRENGILYSFDATKCMFSWGNLSEKLRMGNLECKDEVIVDLFAGIGYFTLPFLVRAKAKLVY ACEWNPHAVEALRRNLEVNSVSDRCIVLEGDNRMTAPKGIANRVCLGLLPTSEDSWATAVRALRSEGGMLHVHGNVKDSQESLWTAHVLKSIDEIARFEG HCWEVSIEHVERVKWYAPHIRHLVADVRCSSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	3.00	0.8861
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	4.47	0.9028
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	5.74	0.8942
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	6.32	0.9027
AT3G23370			RNA-binding (RRM/RBD/RNP motif...		Potri.010G070001 [exp]	6.92	0.8821
AT2G25580			Tetratricopeptide repeat (TPR)...		Potri.014G116600 [exp]	8.48	0.8709
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.001G100600 [exp]	9.48	0.8838
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	10.67	0.8896
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	10.95	0.8903
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	12.32	0.8911

Compare expression of checked genes

Potri.004G015200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.