Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRXR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21960 538 / 0 PRXR1 Peroxidase superfamily protein (.1) AT2G37130 366 / 2e-127 Peroxidase superfamily protein (.1.2) AT5G40150 201 / 4e-62 Peroxidase superfamily protein (.1) AT5G14130 199 / 2e-61 Peroxidase superfamily protein (.1) AT2G18150 192 / 9e-59 Peroxidase superfamily protein (.1) AT2G24800 191 / 3e-58 Peroxidase superfamily protein (.1) AT2G18140 191 / 4e-58 Peroxidase superfamily protein (.1) AT1G05260 190 / 5e-58 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT1G71695 190 / 1e-57 Peroxidase superfamily protein (.1) AT3G50990 189 / 1e-57 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129900 [exp] 383 / 1e-133 AT2G37130 489 / 2e-175 Peroxidase superfamily protein (.1.2) Potri.012G076500 [exp] 201 / 4e-62 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 199 / 2e-61 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 195 / 6e-60 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.001G329200 [exp] 192 / 7e-59 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G122200 [exp] 191 / 2e-58 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 191 / 3e-58 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 191 / 3e-58 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 190 / 4e-58 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006778 [exp] 553 / 0 AT4G21960 540 / 0.0 Peroxidase superfamily protein (.1) Lus10020045 [exp] 497 / 1e-178 AT4G21960 490 / 6e-176 Peroxidase superfamily protein (.1) Lus10015074 [exp] 379 / 5e-132 AT2G37130 498 / 5e-179 Peroxidase superfamily protein (.1.2) Lus10041784 [exp] 198 / 4e-61 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10027163 [exp] 194 / 1e-59 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 189 / 9e-58 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 188 / 2e-57 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 188 / 3e-57 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10004234 [exp] 188 / 5e-57 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10015127 [exp] 187 / 9e-57 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.004G015300.2 pacid=42794709 polypeptide=Potri.004G015300.2.p locus=Potri.004G015300 ID=Potri.004G015300.2.v4.1 annot-version=v4.1 ATGGATGCCAAAGCTCTCTTCTTCTTTGCCTTGTTGTCCTTCTCAGCTGTGTCGGTCAGGCCGGCATTAGCAGAAAATGAAGAAGACCCTGGTCTTGTTA TGAACTTTTACAAGGATACATGCCCTCAAGCTGAGGACATTGTCAAAGAACAAGTTAGACTCCTTTACAAGAGACACAAAAACACTGCATTTTCTTGGCT AAGAAACATCTTCCATGACTGTGCTGTTCAGTCATGTGATGCTTCACTGCTGCTGGACTCAACAAGGAGGACCTTGTCCGAGAAGGAGACAGACAGGAGC TTTGGCCTCAGGAACTTTAGATACTTTGACGATATCAAAGAAGCTGTTGAAAGAGAGTGTCCTGGAGTCGTTTCCTGTGCTGATATTCTTGTCCTGTCTG CTAGAGATGGCATTGTTTCGCTAGGAGGACCTCATATCCCTCTCAAAACTGGAAGAAGGGATGGCAGGAAGAGCAGAGCAGATGTGATCGAGGACTATCT CCCAGACCACAATGAAAGCATATCTGTTGTTCTTGACAGGTTTGCTTCCATGGGTATTGACACCCCTGGACTGGTTGCCTTGCTAGGAGCTCACAGTGTT GGGAGAACTCACTGTGTGAAGCTGGTGCACCGTTTGTACCCGGAAGTTGACCCAGCACTAAACCCTGACCATGTTGAGCACATGCTTTACAAGTGCCCTG ATTCAATCCCAGACCCTAAAGCTGTCCAATATGTGAGGAATGACAGAGGCACACCCATGGTTCTAGACAACAACTACTACAGAAACATATTGGACAACAA GGGCTTGTTGATAGTGGATCACCAACTAGCCACTGACAAGAGAACTAAGCCTTACGTGAAGAAAATGGCCAAGAGTCAGGATTACTTCTTTAAGGAGTTT TCTAGGGCTATCACCATTCTTTCTGAGAACAACCCACTCACCGGTACCAAGGGTGAGATCAGAAAGCAGTGCACTGTTGCAAACAAGCACCACTAG
AA sequence Show only first row Show all	>Potri.004G015300.2 pacid=42794709 polypeptide=Potri.004G015300.2.p locus=Potri.004G015300 ID=Potri.004G015300.2.v4.1 annot-version=v4.1 MDAKALFFFALLSFSAVSVRPALAENEEDPGLVMNFYKDTCPQAEDIVKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRS FGLRNFRYFDDIKEAVERECPGVVSCADILVLSARDGIVSLGGPHIPLKTGRRDGRKSRADVIEDYLPDHNESISVVLDRFASMGIDTPGLVALLGAHSV GRTHCVKLVHRLYPEVDPALNPDHVEHMLYKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKSQDYFFKEF SRAITILSENNPLTGTKGEIRKQCTVANKHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21960		PRXR1	Peroxidase superfamily protein...		Potri.004G015300 [exp]	0	1	Pt-PRXR1.1
AT1G53163			unknown protein		Potri.011G116600 [exp]	5.19	0.8693
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	5.65	0.8622
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	9.79	0.8491
AT1G20030			Pathogenesis-related thaumatin...		Potri.001G220900 [exp]	12.00	0.8045
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	15.74	0.8448
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	15.87	0.8396
					Potri.004G186250 [exp]	16.73	0.7286
AT3G55140			Pectin lyase-like superfamily ...		Potri.008G048600 [exp]	19.23	0.7888
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	21.79	0.7984
AT1G64700			unknown protein		Potri.011G153000 [exp]	22.75	0.8059

Compare expression of checked genes

Potri.004G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.