Plant FIBer expression Database

Potri.004G015401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G015401.3 pacid=42796735 polypeptide=Potri.004G015401.3.p locus=Potri.004G015401 ID=Potri.004G015401.3.v4.1 annot-version=v4.1
ATGGTGGAGCTTCAATCATGTGCTAGCTTGGTCAATGCTTCTGCATTGTGTTCAATAGAGCAAGAAGTGAAAGAAGAGAATACTGTCAATGTTATTGCAG
AGATATCTGCAGAACTACAAAGGGAAAGAGAAAAGAATGCTGAGCTTATGGAGAAAATATCTGTACTTGAAGCTCAAATACAAGAAAGAGATCACAAGGG
GTCCTTGATCACACACAGACAAGGCAGCTCTATCAATGCAACAGAAAGAAGGCTTAAGAGGTTCAAAAGACAGAAATTAAAAGTGATCCAAAATGATGTT
CAAAATGGAAATGTAGTCGATGTTGGGATGGTTTCACAGATAAAGCATGAGATTCCATTCAGTATTCCTCCCAAAGATGCAAATCTTGAAGACTGCTTAG
TCAATTGGATGAGCATGGATGAGACTCAGTTTTCGCAGCTTGAAAAACTGAAAGGTGATGACTCTGCTGCAGATTGTAATGATACAGATGATACTGATGA
AGAAGATGAAGCTGATAATAAAATTGACCACATTAATGGACAAATGGATGTGGTCCATGTGGGTGCTATTGAACTGAAAGAAAATCTTCATGAAGATAGT
GTTGGTGAGGCAATAAAGTTATCATGCTTTGAAAGTTCCTTTGGTGGACAGAGTGAGCAAACATTTCAACATCTGAACCAAGCAAGAAATGAAGATAGAA
AGAATGATGGTCTTCCACCAGAGAAACAACTAGTTCATGATTGCGCAGATGCTCGAAATCATGACAACAGAGAAATTAAAAATAAGGAATCTCACAGGAC
AGAAGCAGATGATTTTGTACCTAAGGAGGCTTGTTATACTCGACCTGGAAATGTATCATTGCTTAGAAAGCCTCCGAAGATAGCTTTCTGTCCCAAGGAA
GTAAAGAGGATACTCGAGTCTGAAGTCCTTCTATTGAGAAATGCTCAGTCCCACACCATCAGAAAAATCATAGTGTTTGCATCTCTTGGTATAAGGCATG
GTTGTGATGATATGTATGAATTAGACTTCAATCATTTTAGCATTCTACGGAAGGGTGAACCATACGTCTCACCGAAAGATCCAGGGGAGTATGTGCTATA
TGAGAATCCAGGAATTCAAAGGAAAATATTTTATCCAAATCGGCAGAATCCAACGCTATGTCCAGTTCAGATTCTTGAGGAAGAGAAGGACATGCGCCGA
TCAGATCCTAGTTGCCCATCATGCCTTTTTCTTTGCATTAAGTATGGTGGGAGGACAAGAAATCTTCCTCAAAATGAATATGTCAGGCAGCGGATGGGAC
GAAACAAGCTCAAGTCTTTCGGGCCACTTTTGTGCCGAATGGCAATGCTAGTTCACATACGCAGTGGGAGCTTCTTCTTCAAGGCCTTAGGAATCACACT
TCTATTCATGGCTGGCTTTCCTGATGACCTGGTACAAAGAGAAACCAAATACCGGAACTTAGACTTGCTGCAAAAATACTACAGGACTGATGAGGACGCA
GAAGGAGAGGAGTTGTTTCTTTCACCGGAAAAGACTTGTGAAGTAGCCAGTCCAGGGTCAAAGAAGTTGACAGGGAAAACAACTTCAACAAAATCAAAGG
GAAAGAAACAATCAAACTCCTCAAGTAAGCCTCATAATCTTCCAAGATCATCAATTCCTGAGTATGTGCCATCAACCTCTGCACCTCCCGCCCCATTTGG
GCATATGGGATATTCCTCAATGCAAACCCATGCAATGGCAGCATTCCAGGCCATCCCATATCAAACTCCACCTGATACTCCAGCAGTCCCAAGCCAAGTA
ATTGACAGTCCTAATGTCTCTTACCATAACCAAACCCCATATCATATGTTCCCACCACAGCCAGCAAATAGTTTCATGCCTATGATATATTGGTCAGCAC
CAAGTGCATTTCCTTCAAGTCCTTATGCCAACACATATGGTTATCGACCTTTTCCATCTACTGCAAACTACATTTCCATACACCATCAGCCTTATTACAG
CCATCCTTCTTTGTGTTCTCCAATTCCCAAAGTGCCAGAAAAGAATGAGAAGAATGAAGTGATCCTGAAGGAGTCTGATATTGACTCTGATAGCAGTTCA
AGCAGTACAGAAACAAAAGTCCCATTACTAAGCTGA
AA sequence
>Potri.004G015401.3 pacid=42796735 polypeptide=Potri.004G015401.3.p locus=Potri.004G015401 ID=Potri.004G015401.3.v4.1 annot-version=v4.1
MVELQSCASLVNASALCSIEQEVKEENTVNVIAEISAELQREREKNAELMEKISVLEAQIQERDHKGSLITHRQGSSINATERRLKRFKRQKLKVIQNDV
QNGNVVDVGMVSQIKHEIPFSIPPKDANLEDCLVNWMSMDETQFSQLEKLKGDDSAADCNDTDDTDEEDEADNKIDHINGQMDVVHVGAIELKENLHEDS
VGEAIKLSCFESSFGGQSEQTFQHLNQARNEDRKNDGLPPEKQLVHDCADARNHDNREIKNKESHRTEADDFVPKEACYTRPGNVSLLRKPPKIAFCPKE
VKRILESEVLLLRNAQSHTIRKIIVFASLGIRHGCDDMYELDFNHFSILRKGEPYVSPKDPGEYVLYENPGIQRKIFYPNRQNPTLCPVQILEEEKDMRR
SDPSCPSCLFLCIKYGGRTRNLPQNEYVRQRMGRNKLKSFGPLLCRMAMLVHIRSGSFFFKALGITLLFMAGFPDDLVQRETKYRNLDLLQKYYRTDEDA
EGEELFLSPEKTCEVASPGSKKLTGKTTSTKSKGKKQSNSSSKPHNLPRSSIPEYVPSTSAPPAPFGHMGYSSMQTHAMAAFQAIPYQTPPDTPAVPSQV
IDSPNVSYHNQTPYHMFPPQPANSFMPMIYWSAPSAFPSSPYANTYGYRPFPSTANYISIHHQPYYSHPSLCSPIPKVPEKNEKNEVILKESDIDSDSSS
SSTETKVPLLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G015401
[exp]
0 1
AT1G78940 Protein kinase protein with ad... Potri.004G170943
[exp]
1.00 0.8344
AT4G32640 Sec23/Sec24 protein transport ... Potri.002G082900
[exp]
3.00 0.8170
AT5G43120 ARM-repeat/Tetratricopeptide r... Potri.002G120800
[exp]
3.74 0.7826
Potri.001G062100
[exp]
10.24 0.8065
AT3G04860 Plant protein of unknown funct... Potri.005G050000
[exp]
11.48 0.7846
Potri.005G096266
[exp]
16.61 0.8096
AT4G03420 Protein of unknown function (D... Potri.019G103000
[exp]
20.49 0.7716
AT5G06510 CCAAT NF-YA10 "nuclear factor Y, subunit A10... Potri.006G201900
[exp]
22.84 0.8049
Potri.012G052502
[exp]
23.95 0.8025
AT1G04570 Major facilitator superfamily ... Potri.008G173600
[exp]
25.41 0.7718

Potri.004G015401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.