Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 390 / 1e-126 unknown protein AT3G20350 338 / 3e-107 unknown protein AT3G11590 135 / 2e-33 unknown protein AT1G11690 88 / 3e-19 unknown protein AT5G22310 81 / 9e-16 unknown protein AT5G41620 72 / 8e-13 unknown protein AT1G64180 58 / 2e-08 intracellular protein transport protein USO1-related (.1) AT2G46250 50 / 4e-06 myosin heavy chain-related (.1) AT1G64690 44 / 0.0003 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003200 [exp] 794 / 0 AT1G50660 350 / 1e-110 unknown protein Potri.011G090100 [exp] 424 / 1e-140 AT1G50660 689 / 0.0 unknown protein Potri.004G199500 [exp] 136 / 1e-33 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 134 / 1e-32 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 126 / 3e-30 AT3G11590 582 / 0.0 unknown protein Potri.009G160900 [exp] 124 / 7e-30 AT3G11590 399 / 9e-132 unknown protein Potri.001G096200 [exp] 103 / 9e-23 AT5G41620 523 / 6e-180 unknown protein Potri.003G135000 [exp] 103 / 1e-22 AT5G41620 494 / 1e-167 unknown protein Potri.002G166600 [exp] 91 / 9e-19 AT5G41620 345 / 6e-110 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040076 [exp] 394 / 4e-128 AT1G50660 756 / 0.0 unknown protein Lus10021521 [exp] 394 / 2e-127 AT1G50660 750 / 0.0 unknown protein Lus10032637 [exp] 355 / 8e-114 AT1G50660 625 / 0.0 unknown protein Lus10043111 [exp] 334 / 7e-106 AT1G50660 616 / 0.0 unknown protein Lus10002069 [exp] 142 / 2e-36 AT1G50660 147 / 6e-38 unknown protein Lus10021324 [exp] 130 / 4e-31 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 126 / 3e-30 AT3G11590 587 / 0.0 unknown protein Lus10013311 [exp] 114 / 3e-26 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 113 / 4e-26 AT3G11590 285 / 1e-88 unknown protein Lus10005200 [exp] 112 / 9e-26 AT3G11590 322 / 1e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G015800.1 pacid=42793775 polypeptide=Potri.004G015800.1.p locus=Potri.004G015800 ID=Potri.004G015800.1.v4.1 annot-version=v4.1 ATGAACTCCACACGTGGGACCCACAACACTGCCACTCCCCGCCGCCGGCGGAGGAACACCACCGGCTCCGTTCGACGGAAGCTCAAAATCCCGCCAACCC CTTTTTTGCATTGGAAGTTTCTTCAAGATGATAACAAGAGCAGACACCCCGCCGCCTCCGGCAGTGTTGCCAGCGGAGTGAAGCCGGCCGGACAGGGAGG TGTTGGTGTTGGTGGTAGTAGGGCTGCAGTGTCGGCTAGGAAGCTGGCGGCTGGGCTGTGGAACCTATGCTTGGCGGGTGGTGGTGGAGGTGATAAAGCT TTGAACTTGAAATATGGGAAAACTGATGAATTGGGGTTAGAGATTGAATCCCCGTTACTGTATTCTAAGCATATCATGGAGGGTGCAATGAAGTGGGAAC CGAGATGCTCAAGAAAATTCAGTGACATCTGCAGCTTTTATAGCCACACAAAACTTCTTGAAAATCAAGTTGCTATGGTGTCTGCTTCTGCCATGCAAGA AGAACTAGTGCAAGCTCGATTGCGCATTCATGAGCTTGAAGCTGAGTGCCAGTCTTATGAGAAGAAAGTCAAACACTTACAGAAGAAGCTGGGAGAAGAA AGAACCTCATGGCAGAGCAGCGAACGTCAGAAAATTCATGCAGTTATAGATGATTGTGAAAATCAAATAAGCAGGGAAAGAAAAAAACGCCAAAAGCTGG AACTTCTCAATTATAAATTGGTCAATGAGTTATCAAATGTCAAATCCTCTGCAAAGCAGTTCAGGGAAGATTATGAAGAGGAACAAAAGGCCAGAGAAAT AATGGAGGAAGTTTGCAATGAACTTGCCTATAAAGTTGCGGAAGATAAAGCTGAAGTTGAAACATTCAAGACTGAGTCCATCAGGATTCAGGAAGAAATG GAAGAAGAGAGGAAGATGTTGCAGATGGCTGAGGTATGGCGCGAAGAACGGGTCCAAATGAAGTTGATTGATGCAAAACTGGCCCTTGAAGACAAGGATT GCCAAATGAATAAATTAATAACAGACCTTGAAACTTTTCTAAGGTCAAGAAGTGGCACCTTGGATGTGAATGAGTTAAGGAAAGCCGAGTTGATCAGACA AGCAGCAAAATTGGTAAATGTTAAAGACATCAAGGAATTTTCTTATGCCCCACCAAAATTAAGTGATATATACTCTATTTATGAAGAACTCAAGCAAATT GAAGACAATGAAAGGGAGATTGAAGAATGCAAGAAGAGCAGCCCTGCAAGCAATGCTTCCAAACTCCATCTTGCCAGTTCTGATTTGAGTGCCTATAACT ACCATTCTTTGCAGCAAGGGTCGACTATTATTAATGATGATAACCGTCATTTAGAAGATGCAAGAGGCTGTGATGCAGTGAGTCATGCTGAGGGTCAAGG TTCGAGTTATTCCCATGAAGGGAATCAACTCCCTGTTAGCAGGCTTAGCCAAAGCAAAAATGCTTGGCAGATTGCAAGAGAATGTGATGAGAATGAAGCT CAGAATTCTCCAAACACACAAAGTGGTGGTGTCTACTCGGTAACGGGAGAATCAATGCACAGGGCATCTTCCATATCTAAGCTTTCAAGATCTGCCCAAT GTAACAACAAATGCTATGAGATAACAGCAGATGACAGTAATGGAGTGGCCTTGAATGGAAAATTTTCTAACAAGGAGACTTCTCCCAGAAGAAAGTCGTG GGAATGTATGCTTCGGCACCAAGATTCCATGGAGCAGTGGAGCTCGCCAGAGTCAGTGAATCCACACGTTACTCAAGGAATTAAAAAGCGATTTAAATGG TCCCGAGGCATCCAAAAGAATAGTTTGAAGGCCAAGCTTTTGGAAGCCAGGATGGAAAGCCAGAAAGCTCAGTTGCGCAGTGTTCTTAAACAAAAGACTT AG
AA sequence Show only first row Show all	>Potri.004G015800.1 pacid=42793775 polypeptide=Potri.004G015800.1.p locus=Potri.004G015800 ID=Potri.004G015800.1.v4.1 annot-version=v4.1 MNSTRGTHNTATPRRRRRNTTGSVRRKLKIPPTPFLHWKFLQDDNKSRHPAASGSVASGVKPAGQGGVGVGGSRAAVSARKLAAGLWNLCLAGGGGGDKA LNLKYGKTDELGLEIESPLLYSKHIMEGAMKWEPRCSRKFSDICSFYSHTKLLENQVAMVSASAMQEELVQARLRIHELEAECQSYEKKVKHLQKKLGEE RTSWQSSERQKIHAVIDDCENQISRERKKRQKLELLNYKLVNELSNVKSSAKQFREDYEEEQKAREIMEEVCNELAYKVAEDKAEVETFKTESIRIQEEM EEERKMLQMAEVWREERVQMKLIDAKLALEDKDCQMNKLITDLETFLRSRSGTLDVNELRKAELIRQAAKLVNVKDIKEFSYAPPKLSDIYSIYEELKQI EDNEREIEECKKSSPASNASKLHLASSDLSAYNYHSLQQGSTIINDDNRHLEDARGCDAVSHAEGQGSSYSHEGNQLPVSRLSQSKNAWQIARECDENEA QNSPNTQSGGVYSVTGESMHRASSISKLSRSAQCNNKCYEITADDSNGVALNGKFSNKETSPRRKSWECMLRHQDSMEQWSSPESVNPHVTQGIKKRFKW SRGIQKNSLKAKLLEARMESQKAQLRSVLKQKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50660			unknown protein		Potri.004G015800 [exp]	0	1
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	5.00	0.7613
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	5.19	0.7453
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	8.00	0.6917	Pt-ARF6.3
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	9.38	0.7855
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	10.39	0.7517
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.001G161500 [exp]	19.18	0.7139
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	19.79	0.7512
AT2G41990			unknown protein		Potri.009G140600 [exp]	28.91	0.7382
AT4G15450			Senescence/dehydration-associa...		Potri.018G087500 [exp]	34.89	0.7043
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Potri.003G131600 [exp]	35.49	0.7181

Compare expression of checked genes

Potri.004G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.