Plant FIBer expression Database

Potri.004G016000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61900 524 / 0 unknown protein
AT2G30700 300 / 7e-97 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G003000
[exp]
785 / 0 AT1G61900 521 / 0.0 unknown protein
Potri.007G133800
[exp]
298 / 3e-96 AT2G30700 608 / 0.0 unknown protein
Potri.017G018000
[exp]
296 / 1e-95 AT2G30700 614 / 0.0 unknown protein
Potri.007G133733
[exp]
164 / 6e-48 AT2G30700 298 / 9e-100 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020048
[exp]
504 / 4e-178 AT1G61900 479 / 5e-169 unknown protein
Lus10006773
[exp]
499 / 4e-176 AT1G61900 445 / 1e-155 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G016000.1 pacid=42795881 polypeptide=Potri.004G016000.1.p locus=Potri.004G016000 ID=Potri.004G016000.1.v4.1 annot-version=v4.1
ATGAGTGAAGGGGTGTCTCTCAAGGTGAAGCTGAGTCTGAGTATGGTTTTTGTGGAGGTGTTTCTTTTGATTTTGAGTCTGAATGAATGTCACTGCAGCC
CATTCAATAATCATGGAGGCTCATTGTCAACTGACAGAAGAGTGGATGGTTTTCTGCCTGAGATCTCTCCAAATTCAGCTCCTCAGCCCCTTCTTCCTCT
TCTTGCACCTTCTCCTTTCGCACCTTTCACAAACATTACTATCCCAAAGTTATCAGGACAATGCACGTTGAATTTCACTGCTGCTCAAAGTTTGATGAGA
ACGACATCAACTGATTGTTGGTCTATTTTTGCGCCATTGCTGGCTAATGTTATATGCTGTCCCCAGTTAGAAGCCACCCTTGCAATTCTTATGGGCCAAT
CCAGTAAAGATACCAGAACTCTTGCTTTAAATGAGACTGTTTCAAAGCATTGCCTTTCAGATATCGAGCAAATTTTGGCTGGTCAGGGTGCAGAAAGTAA
TGTGAATAAGATATGCTCAATTCATCTATCAAATCTCACTGGAGGGTCTTGCCCTGTTAAGGATGTCAATGAATTTGAGGGCACTGTGGATTCTTCTAAG
CTTCTTGCTGCCTGCGAGAATATTGATCCCGTTAAAGAATGTTGTGATCAAGTTTGTCAAAATTCCATATTAGAAACTGCTACAAAACTTGCACTAAAAG
CTTCTGAAGTATTGATCATAGCTGGGTCCCATGGTTTAACTGAGCACTCAACAAAGGTTGATGATTGTAAACATATTGTACTTCGATGGCTGGCTGGTAA
ACTTGAGCCTTCCCGTGCAAAGGAGGTTCTCAGAGGACTATCTAATTGCAAAGTTAATAAAGTTTGCCCTCTGGTTTTCCCTGACATGAGACATGTTGCA
AAGGGCTGTGGGAATGAGATTAGTAACGAGACAGAATGCTGTCGTGCCATGGAGAGCTATGTGTCTCACTTGCAGAAGCAGAGTCTTATAACTAACTTGC
AAGCTCTGGATTGTGCTACAACTCTAGGAATGAAGTTACAGAGGTCTAATATTACAAAAGATGTTTATAGCCTTTGTCACATAACCCTTAAGGATTTCTC
CCTTCAAGTTGCAAAACAAGAGTCTGGATGCCTTCTACCAAGCTTGCCGTCAGATGCAACATTTGACCATTCCTCAGGGATCAGCTTCATCTGTGATTTG
AATGACAATATTCCTGCTCCATGGCCGTCAAAGTCTCAGTTATCAGCACCGTGCAATAAAACCATCAAAATCCCAGCACTTCCTGCTGCTGCAAATGCTC
AAAGTGGTCTTTACAATGAAGATGTGGTAATTTATGTGCTGTTTGCTGCCTCAGCTGTTACCATGATGCTCTTGTAG
AA sequence
>Potri.004G016000.1 pacid=42795881 polypeptide=Potri.004G016000.1.p locus=Potri.004G016000 ID=Potri.004G016000.1.v4.1 annot-version=v4.1
MSEGVSLKVKLSLSMVFVEVFLLILSLNECHCSPFNNHGGSLSTDRRVDGFLPEISPNSAPQPLLPLLAPSPFAPFTNITIPKLSGQCTLNFTAAQSLMR
TTSTDCWSIFAPLLANVICCPQLEATLAILMGQSSKDTRTLALNETVSKHCLSDIEQILAGQGAESNVNKICSIHLSNLTGGSCPVKDVNEFEGTVDSSK
LLAACENIDPVKECCDQVCQNSILETATKLALKASEVLIIAGSHGLTEHSTKVDDCKHIVLRWLAGKLEPSRAKEVLRGLSNCKVNKVCPLVFPDMRHVA
KGCGNEISNETECCRAMESYVSHLQKQSLITNLQALDCATTLGMKLQRSNITKDVYSLCHITLKDFSLQVAKQESGCLLPSLPSDATFDHSSGISFICDL
NDNIPAPWPSKSQLSAPCNKTIKIPALPAAANAQSGLYNEDVVIYVLFAASAVTMMLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61900 unknown protein Potri.004G016000
[exp]
0 1
AT3G05480 ATRAD9 cell cycle checkpoint control ... Potri.013G017500
[exp]
1.73 0.8835
AT2G35060 KUP11 K+ uptake permease 11, K+ upta... Potri.001G123700
[exp]
2.64 0.8947 Pt-KUP10.1
AT2G16950 ATTRN1 transportin 1 (.1.2) Potri.009G138200
[exp]
6.00 0.8837
AT1G13250 GATL3 galacturonosyltransferase-like... Potri.008G116900
[exp]
6.70 0.8621
AT4G39630 unknown protein Potri.005G082500
[exp]
8.48 0.8747
AT1G35510 O-fucosyltransferase family pr... Potri.019G080900
[exp]
9.16 0.8549
AT2G38430 unknown protein Potri.019G029900
[exp]
10.72 0.8416
AT3G17380 TRAF-like family protein (.1) Potri.017G049100
[exp]
14.00 0.8770
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Potri.002G234600
[exp]
14.24 0.8704
Potri.003G070000
[exp]
14.28 0.8490

Potri.004G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.