Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11660 1025 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT1G79920 786 / 0 AtHsp70-15 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G79930 784 / 0 AtHsp70-14, HSP91 heat shock protein 91 (.1.2) AT5G42020 278 / 6e-83 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 277 / 1e-82 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 275 / 6e-82 HSP70B heat shock protein 70B (.1) AT5G02500 274 / 1e-81 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT4G16660 275 / 2e-80 heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 270 / 3e-80 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 267 / 4e-79 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139100 [exp] 1025 / 0 AT1G11660 990 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G055800 [exp] 764 / 0 AT1G79920 1283 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G180100 [exp] 755 / 0 AT1G79920 1262 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 278 / 3e-83 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 273 / 3e-81 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 271 / 1e-80 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 270 / 2e-80 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 270 / 5e-80 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G087500 [exp] 269 / 9e-80 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019627 [exp] 944 / 0 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10040078 [exp] 941 / 0 AT1G11660 919 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10011461 [exp] 776 / 0 AT1G79930 1282 / 0.0 heat shock protein 91 (.1.2) Lus10037529 [exp] 776 / 0 AT1G79930 1313 / 0.0 heat shock protein 91 (.1.2) Lus10037531 [exp] 771 / 0 AT1G79920 1269 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10011463 [exp] 675 / 0 AT1G79920 1167 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10002319 [exp] 278 / 5e-83 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 276 / 2e-82 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10017306 [exp] 276 / 1e-81 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10025333 [exp] 263 / 1e-77 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.004G016700.5 pacid=42796167 polypeptide=Potri.004G016700.5.p locus=Potri.004G016700 ID=Potri.004G016700.5.v4.1 annot-version=v4.1 ATGAGTGTGGTGGGATTTGATTTTGGGAACGAGAATTGTGTGATTGCAGTAGCGAAGGAACGTGGGATTGATGTTTTGTTGAACGATGAATCAAATCGTG AGACACCGGCTGTGGTGTCTTTTTTTGAGAAGCAGAGATTTATGGGTTCAGAGGGAGCTGCTTCTTTGACTATGAATCCTAAATCGACAGTTTCTCAGGT TAAGCGATTGATTGGGAGGAAGTTTAAAGAAGTTGAGGTTCAAGATGATCTTAAATTGTTTCCTTTTGAGATTGTAGAGGGCCATGATGGTGGTATTTTG ATTAAGGTGCAGTACTTGGGTGAGATTCATGAGTTTAGTCCAGTTCAGATTTTGGGGATGTTATTTTCTCATTTGAAACAAATAGCAGAGAAGAGTCTCG AGATGCCTATTTCTGATTGTGTTATTGGTATTCCATGTTACTTCACGGATTTGCAAAGACGTGCTTATTTGGATGCAGCTGCAATTGCTGGACTGCGACC TTTGCGGTTGTTGCATGACTGTACTGCAACTGCACTGGGATATGGCATTTACAAAAATGATATCTCCAATGCAGGCCCAACTTATGTTGTATTTGTTGAT ATTGGTCACTGTGACACCCAGGTCTGTCTGGCATCTTTCGAGAGTGGACAAATGAAGATATTATCACATGCATTTGACAGGAACCTGGGAGGGAGAGACT TTGATGAGGTTCTCTTCAGTTATTTTGCAGCACTGTTCAAGGAGAAAGATGACATTGATGTTTGTACTAATATGAAGGCATCTATTAGGTTGAGGGCTTC ATGTGAGAAATTGAAGAAGGTCTTGAGTGCAAATGCAGAGGCGCCACTTAATATAGAGTGCTTGATGGATGAAAAAGATGTTAGAGGTTTTATTAAGAGG GAGGAGTTTGAAAGGCTGTCATCAGGTTTGGTGGAAAGCATTAGTGTTCCCTGTCGAAAGGTGCTGGCTAACTCTGGCCTGACTGTAGAAAAGATTCATT CGGTTGAACTTGTTGGTTCTGGGTCTAGGATACCAGCAATTACTAGAATGCTAGCTTCTCTATTCAAGAGAGAGCCAAGCCGGAGAATAAATGCAAGTGA GTGTGTGGCTCGTGGTTGTGCTCTTCAGTGTGCAATGCTGAGCCCAATATTTCGAGTTAGAGAATACCAGGTTCAAGATTCATTTCCTTTCTCCATTGGA CTCTCATCAGATAAAGTTCCAATTTGCACATTGCCAAATAGCACGCTTTTCCCAAAAGGCCAGGCTTTCCCAAGTCTTAAGATACTTGCTCTTCACAGAA ATAATATGTTTCAGATGGAAGCCTTCTATGCTGATCCGAATGAACTGCCTTTTGGCATAGCATCACAAATCAGCAGTTTTATGATTGGGCCTTTTCCAGT TTATCAATTGGAAATGGTGAAAGTTAAGGTTAGAGTTCAGTTAAACCTCCATGGAATAGTAAACATAGAGGCATTCATGCAAATTGAGGATGGTGCTGAA GTTACAAATGTTACTTCAGAAAATATGGTGGCCAAATCCGACCATTCACCTTCTGTTGAACAAAATGGTGCTGAAGTTACTAATGTCGCACAGTCAGCAC CTTCATCCATACCTGCGGATGAAATTAGGAAAGGAAAAATTTTCAAAAGGCTTGAAATTCCAGTCAGTGAGGAAGTCTATGGAGGAATGACAAAGGCTGA GCTCTCAGAGGCTGAGAAGATAGAGCTTCAGTTGGCACAACAGGACTTGAAGATGGAGCGGATAAAAGACAAGAAAAATGCTTTGGAGTCCTATGTCTAT GAGATGCGAGATAAGATTTTCAGTAAGTACCAGAGCTTTGCCACCGAGTCAGAAAGGAATGAGATCTCTATAAATCTTGAAAAGACAGAGGAGTGGCTTT ACGAAGATGAACCTGATGATGAATCAGAAAATATTTATAATCAAAAGTTAGAGGATCTTAGAAAGCTTGTTGATCCTATTGAAATTCGATATAAAGAAGA CGAGGCCAGAGAAAAAGCAAGAAAGGATCTCCTAAGTTGCATCGCGGATTATCGAATGAATGCTGGGTCACTTACAGCTGGTGAGAGGGATGCGGTTATA GATGAGTGCAACAAGGCTGAAAATTGGCTGCAAGAGAAAACTCAACAGCAGGACTCATTACCAAAAAATGTTGATCCAGTGCTGTGGTCATGCGAAATCA AGAGAAAAGCAGAGGGTTTTGATGCGACCTGCAAATATATAACAAAATCTCTCCCAAGAACAGATGATTCGGATCACATAGACAAACCAGATGACGGGGA GTTAGATTGA
AA sequence Show only first row Show all	>Potri.004G016700.5 pacid=42796167 polypeptide=Potri.004G016700.5.p locus=Potri.004G016700 ID=Potri.004G016700.5.v4.1 annot-version=v4.1 MSVVGFDFGNENCVIAVAKERGIDVLLNDESNRETPAVVSFFEKQRFMGSEGAASLTMNPKSTVSQVKRLIGRKFKEVEVQDDLKLFPFEIVEGHDGGIL IKVQYLGEIHEFSPVQILGMLFSHLKQIAEKSLEMPISDCVIGIPCYFTDLQRRAYLDAAAIAGLRPLRLLHDCTATALGYGIYKNDISNAGPTYVVFVD IGHCDTQVCLASFESGQMKILSHAFDRNLGGRDFDEVLFSYFAALFKEKDDIDVCTNMKASIRLRASCEKLKKVLSANAEAPLNIECLMDEKDVRGFIKR EEFERLSSGLVESISVPCRKVLANSGLTVEKIHSVELVGSGSRIPAITRMLASLFKREPSRRINASECVARGCALQCAMLSPIFRVREYQVQDSFPFSIG LSSDKVPICTLPNSTLFPKGQAFPSLKILALHRNNMFQMEAFYADPNELPFGIASQISSFMIGPFPVYQLEMVKVKVRVQLNLHGIVNIEAFMQIEDGAE VTNVTSENMVAKSDHSPSVEQNGAEVTNVAQSAPSSIPADEIRKGKIFKRLEIPVSEEVYGGMTKAELSEAEKIELQLAQQDLKMERIKDKKNALESYVY EMRDKIFSKYQSFATESERNEISINLEKTEEWLYEDEPDDESENIYNQKLEDLRKLVDPIEIRYKEDEAREKARKDLLSCIADYRMNAGSLTAGERDAVI DECNKAENWLQEKTQQQDSLPKNVDPVLWSCEIKRKAEGFDATCKYITKSLPRTDDSDHIDKPDDGELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.004G016700 [exp]	0	1
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.010G023500 [exp]	4.12	0.7378
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.001G073300 [exp]	9.48	0.6846	Pt-ARPC2.2
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.007G067000 [exp]	22.27	0.7055
AT2G46090			Diacylglycerol kinase family p...		Potri.002G162900 [exp]	24.08	0.6706
AT5G51890			Peroxidase superfamily protein...		Potri.015G138300 [exp]	27.54	0.7033
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	28.14	0.6451
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Potri.008G076500 [exp]	32.68	0.6851
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.001G396300 [exp]	41.85	0.6714
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	42.00	0.6555
					Potri.001G338300 [exp]	57.68	0.6585

Compare expression of checked genes

Potri.004G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.