Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LAF6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04770 924 / 0 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 645 / 0 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1) AT1G32500 91 / 4e-19 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144500 [exp] 82 / 2e-16 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.003G089700 [exp] 75 / 4e-14 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025788 [exp] 959 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10034750 [exp] 950 / 0 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10035874 [exp] 949 / 0 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10010168 [exp] 71 / 7e-13 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10017374 [exp] 71 / 1e-12 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [poplar] [flax] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Potri.004G016900.1 pacid=42794702 polypeptide=Potri.004G016900.1.p locus=Potri.004G016900 ID=Potri.004G016900.1.v4.1 annot-version=v4.1 ATGGCTTCTTTGTTATCAAACACTATCTCTCACTTTTCTCCAAAACCCATTAAAGATTCACCAAAATTGAACAAACCCTTTTCCTTTCAGATAAAACCCA TCTTTTTTAAGCCTTCAAAACTGAATCTTTTCAAGATCCGTGCTGATGTTGGGTTTGAATCTAAGACAGTCAAGACCGTTCCAGGTAACTCAGCAGCAAC TGGTACTTCTTCTACTAGCTCTGATGATAAGATTAGAGAGATTTTAAGGAATCGTGATTACAACGAGAAGTTTGGATTCAATATGGATATTGATTCCTTT ACAATTCCTAAAGGTCTTTCGAAAGAAACAATAAGGCTAATTTCTTCACTTAAAGAAGAACCTGATTGGATGCTTGATTTTAGGTTGAATGCTTTTGAGA GATTCTTGAAATTGAAAGAACCTAAATGGTCTGATAATGAATACCCTATTATTGATTTTCAAGATATGTGTTATTATTCTGCTCCTAAGAAGAAACCTAC TGTGAATAGTTTAGAGGAAGCTGACCCGGAACTTATTAAATATTTTGATAGATTGGGGATTCCTTTAACTGAAAGGAATAGATTGGCGAATGTTGCTGTT GATGCTGTTCTTGATAGTGTTTCTATAGCTACTACTCATAGGAAGACTCTAGAGAAGGCTGGTGTTATATTTTGTTCGATTTCAGAGGCAATACAGAAGT ATCCTGATTTGGTTAGGAAGTATTTGGGTAGAGTTGTGCCTAGTGAGGATAATTATTATGCTGCTTTGAATTCTGCTGTGTTTAGTGATGGATCATTCTG CTATGTACCGAAAGATACCAAGTGTCCCATGCAGATATCGACTTATTTTAGGATTAACGCGATGGAGACTGGACAGTTTGAGAGAACGTTGATTGTTGCT GATGATAGGAGTTTTGTGGAGTATTTGGAGGGGTGTACTGCACCTTCTTATGATAAGAATCAGCTTCATGCTGCTGTTGTTGAGCTGTATTGTGCTGAGG GTGCGGAGATTAAATACTCCACGGTGCAGAATTGGTATGCTGGTGATGAGCAAGGAAAAGGGGGGATTTATAATTTTGTTACAAAGAGAGGACTTTGTGC TGGGGATAGGTCTAAGATATCTTGGACTCAAGTGGAGACAGGGTCTGCCATTACCTGGAAGTACCCGAGTGTTGTTTTGGAGGGGGATGATACTGTGGGA GAGTTCTATTCTGTTGCGTTGACAAATAATTATCAGCAGGCAGATACAGGAACGAAGATGATCCATAAGGGTAAAAATACTAGAAGTCGAATTATTTCAA AGGGTATTTCAGTTGGACATTCTAGAAACTGTTATAGAGGGCTGGTTCAGGTTCAATCCAAGGCAGACAATGCTCGGAACTCCTCACAATGTGACTCAAT GCTTATTGGTGACACTGCAGCTGCCAATACCTATCCTTATATCCAGGTGAAGAATCCCACTGCACGTGTTGAACATGAAGCCAGCACCTCCAAGATTGGT GAAGATCAGCTGTTTTACTTTCAGCAAAGGGGAATTGACTATGAAAAAGCCATGGCAGCCATGATTTCTGGGTTTTGCCGAGACGTCTTCAATGAACTTC CTGATGAATTTGGTTCTGAGGTGAACCAGCTGATGAGCTTAAAGCTTGAGGGATCAGTGGGTTAA
AA sequence Show only first row Show all	>Potri.004G016900.1 pacid=42794702 polypeptide=Potri.004G016900.1.p locus=Potri.004G016900 ID=Potri.004G016900.1.v4.1 annot-version=v4.1 MASLLSNTISHFSPKPIKDSPKLNKPFSFQIKPIFFKPSKLNLFKIRADVGFESKTVKTVPGNSAATGTSSTSSDDKIREILRNRDYNEKFGFNMDIDSF TIPKGLSKETIRLISSLKEEPDWMLDFRLNAFERFLKLKEPKWSDNEYPIIDFQDMCYYSAPKKKPTVNSLEEADPELIKYFDRLGIPLTERNRLANVAV DAVLDSVSIATTHRKTLEKAGVIFCSISEAIQKYPDLVRKYLGRVVPSEDNYYAALNSAVFSDGSFCYVPKDTKCPMQISTYFRINAMETGQFERTLIVA DDRSFVEYLEGCTAPSYDKNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEQGKGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDTVG EFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGHSRNCYRGLVQVQSKADNARNSSQCDSMLIGDTAAANTYPYIQVKNPTARVEHEASTSKIG EDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	0	1	Pt-LAF6.1
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	1.73	0.9767
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	3.16	0.9653
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.003G127100 [exp]	3.46	0.9637
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.004G222600 [exp]	5.09	0.9601
AT1G28140			unknown protein		Potri.001G100300 [exp]	6.78	0.9734
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	7.74	0.9636
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	8.36	0.9636
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	9.64	0.9726
AT2G44870			unknown protein		Potri.004G030100 [exp]	11.83	0.9685
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	12.96	0.9674	Pt-CLPR1.1

Compare expression of checked genes

Potri.004G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.