Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21895 96 / 2e-22 DNA binding (.1) AT5G52890 88 / 8e-19 AT hook motif-containing protein (.1.2) AT5G54930 72 / 1e-13 AT hook motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001901 [exp] 595 / 0 AT4G21895 74 / 5e-15 DNA binding (.1) Potri.001G422966 [exp] 86 / 3e-18 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2) Potri.011G138700 [exp] 85 / 1e-17 AT5G54930 93 / 5e-21 AT hook motif-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001140 [exp] 177 / 3e-50 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2) Lus10002064 [exp] 158 / 8e-43 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2) Lus10040754 [exp] 82 / 4e-17 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2) Lus10016478 [exp] 82 / 4e-17 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G017000.1 pacid=42796476 polypeptide=Potri.004G017000.1.p locus=Potri.004G017000 ID=Potri.004G017000.1.v4.1 annot-version=v4.1 ATGAACCCTCTAAGTCAGGGGACTAGCTCTTCTCCGGTGGATCCTCCTATGAAACGCAAACGCGGCCGTCCACGCAAGGATGAGAGTGCTGTGCTAGGTG AGAAAACACCAGTAATGCCTGAATCTGACAATATGAAGAAAAACAAACAGACTGTAGGACCAACTGATTCTGCTGGTGTTAACATGGTGGGTCGGGTGAT TACTGGTGTTATTGATGGTTTATTTGACGCTGGATACCTTGTTAAAGTTAAGGTAGAAGACTCTGACATTCCTCTGAGGGGTCTTGTATTTCAACCTGGC CGATTCACTCCCATCACTGCTGAAAATGATGTGGCTCCACAAGCAAAAATGTACAGAAGAGCAGATATTCCCATCCCAGTTTTTCATCCTCCAACTCAGT TGCCTAGTTTTGTTACTTCACCAAAGCACAGTGGTAAGCAACTGGTTGAGCTAAAAAAGCTCGCACTGACTGTTCAGGACAAAGGGCTCCAATCTGGGTT TCAACCAACTGCTCCAATTGCAAAGGAGAGCCTATCTGCTTCTCAGATGCTGCCTCGGACTGAATACTTGCAGGGTAGCACAGGACCTTTGTTTGGAGGA AACGTCATGCCGCCTCAAGTTTTGGGTTCAGGACATGAGAATCAATCTGTCTCTGTTACGGCAGAGATGGAGCACAATAAGATTGCCGGACAGCATGATT TGCTGCAGGAATTCAAAGCCTCACTAAGAAAAGGACCTAATTTAAATGTAAAGGCTAGTGAACAATTAAAATCGGTGTCTCTACCTTCACCCCCTGCTGA TATTTTGCCAGTGAGTGAAACTCAAAAGCAGCCTTCTGGTGATGACCTTAAGCTGAATCAACCGGTCCATGATGGAGTGAAAGGCCCTTGTTCTTTAATG GAAAAACAGGCTTCTCCAAAAAATGCTGGTCCTTCAGAGCCTGCTATGAAGATTATCAGTGGAGATGACACATCCCATCTTAATCGTAGTCCTATTCCTA TAGGTCATGCTGCTAATACTACCGAGGCAAACTCACTATCCTCACCAATTGCAAGCTTTCCATCACTGCTGTTCGGGAGAGAAGCTATTCCCCCAACACA GAAGCTTGCAGCTGAAGGATTCTCTCTTCAGAGAGTCATTGAACCCCAGTCAGATGTTCCTTCTGGTGCTACAAATATTATGAAGGCAGGGGTAGACATT TCAGCAGCGACCAGCCTACCTGCAACTCTATTTGGGAGAAAAGCTATACTACCAGAATCCAAGGCTGCTGCTGACGAACCTGTTCTTCCTAGGATGACTG AACCCCAGCTCTGCAATTCTCCTGATGTTACTAATAATGTGGACAGTAATATCAAGGATGTCATCCCACCTGCCGAATCTTAG
AA sequence Show only first row Show all	>Potri.004G017000.1 pacid=42796476 polypeptide=Potri.004G017000.1.p locus=Potri.004G017000 ID=Potri.004G017000.1.v4.1 annot-version=v4.1 MNPLSQGTSSSPVDPPMKRKRGRPRKDESAVLGEKTPVMPESDNMKKNKQTVGPTDSAGVNMVGRVITGVIDGLFDAGYLVKVKVEDSDIPLRGLVFQPG RFTPITAENDVAPQAKMYRRADIPIPVFHPPTQLPSFVTSPKHSGKQLVELKKLALTVQDKGLQSGFQPTAPIAKESLSASQMLPRTEYLQGSTGPLFGG NVMPPQVLGSGHENQSVSVTAEMEHNKIAGQHDLLQEFKASLRKGPNLNVKASEQLKSVSLPSPPADILPVSETQKQPSGDDLKLNQPVHDGVKGPCSLM EKQASPKNAGPSEPAMKIISGDDTSHLNRSPIPIGHAANTTEANSLSSPIASFPSLLFGREAIPPTQKLAAEGFSLQRVIEPQSDVPSGATNIMKAGVDI SAATSLPATLFGRKAILPESKAAADEPVLPRMTEPQLCNSPDVTNNVDSNIKDVIPPAES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21895			DNA binding (.1)		Potri.004G017000 [exp]	0	1
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	2.23	0.9033
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	2.23	0.9161
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	4.00	0.9136
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	5.47	0.8984	CYCD3.4
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	6.00	0.8794
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	6.32	0.8960
AT2G29560		ENOC	cytosolic enolase (.1)		Potri.009G040700 [exp]	7.54	0.8789
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	9.79	0.9099	Pt-FAH1.1
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	12.96	0.9090	KDSA.1
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	13.22	0.8678	PEPC.2

Compare expression of checked genes

Potri.004G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.