Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04780 208 / 2e-70 MED21 mediator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008009 [exp] 204 / 6e-69 AT4G04780 202 / 3e-68 mediator 21 (.1) Lus10024509 [exp] 202 / 2e-68 AT4G04780 201 / 9e-68 mediator 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11221 [poplar] [flax] Med21 Subunit 21 of Mediator complex
Representative CDS sequence Show only first row Show all	>Potri.004G017100.1 pacid=42793903 polypeptide=Potri.004G017100.1.p locus=Potri.004G017100 ID=Potri.004G017100.1.v4.1 annot-version=v4.1 ATGGACATAATATCTCAGTTACAGGAGCAAGTGAATCAAATAGCAGGGCTTACTTTCAACACTTTTGGTACTCTTCAACGAGATGCACCATCAGCCAGAC TCTCTCAAAACTACCCAGAACCTCCTCCAAATCCTACAGAAGATGCTGCCAGTTTCCCTGAGCAACCAAAACAGATGAGTGCTGCCCTTGTCAAAGCTGC TAAACAGTTTGATGCATTGGTTGCAGCACTCCCTTTGTCTGAGGGAGGTGAGGAAGCCCAACTGAAAAGGATTGCAGAACTCCAGGCTGAAAATGATGCT GTAGGCCAGGAACTTCAAAGGCAACTGGAGGCAGCGGAGAGGGAGCTAAAACTGGTGCAAGAGTTGTTCGGTCAAACTACAGATAATTGCTTGAACTTGA AGAAACCAGATTGA
AA sequence Show only first row Show all	>Potri.004G017100.1 pacid=42793903 polypeptide=Potri.004G017100.1.p locus=Potri.004G017100 ID=Potri.004G017100.1.v4.1 annot-version=v4.1 MDIISQLQEQVNQIAGLTFNTFGTLQRDAPSARLSQNYPEPPPNPTEDAASFPEQPKQMSAALVKAAKQFDALVAALPLSEGGEEAQLKRIAELQAENDA VGQELQRQLEAAERELKLVQELFGQTTDNCLNLKKPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04780		MED21	mediator 21 (.1)		Potri.004G017100 [exp]	0	1
AT1G26740			Ribosomal L32p protein family ...		Potri.008G090100 [exp]	2.23	0.9139
AT2G36130			Cyclophilin-like peptidyl-prol...		Potri.016G075600 [exp]	4.89	0.8812
AT1G04985			unknown protein		Potri.014G159600 [exp]	6.78	0.9069
AT2G39440			unknown protein		Potri.012G120100 [exp]	20.59	0.8431
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	23.66	0.8849
AT2G41640			Glycosyltransferase family 61 ...		Potri.016G057000 [exp]	24.04	0.8676
AT5G60840			unknown protein		Potri.012G065400 [exp]	24.12	0.8882
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Potri.009G067500 [exp]	24.49	0.8715
AT1G73770			unknown protein		Potri.012G046000 [exp]	25.98	0.8902
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	30.72	0.8913

Compare expression of checked genes

Potri.004G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.