Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21820 814 / 0 binding;calmodulin binding (.1) AT4G16150 46 / 0.0002 CAMTA calmodulin binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041800 [exp] 61 / 7e-09 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1) Potri.008G174500 [exp] 46 / 0.0003 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.005G089200 [exp] 45 / 0.0007 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.007G074800 [exp] 44 / 0.0008 AT3G19960 1899 / 0.0 myosin 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007665 [exp] 914 / 0 AT4G21820 1085 / 0.0 binding;calmodulin binding (.1) Lus10003315 [exp] 54 / 2e-06 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10043153 [exp] 54 / 2e-06 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 52 / 6e-06 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10016873 [exp] 50 / 2e-05 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10013443 [exp] 49 / 4e-05 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10037738 [exp] 49 / 4e-05 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10008461 [exp] 49 / 5e-05 AT2G31900 809 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Lus10017377 [exp] 47 / 0.0001 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10040996 [exp] 46 / 0.0003 AT3G19960 1049 / 0.0 myosin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.004G017500.1 pacid=42794550 polypeptide=Potri.004G017500.1.p locus=Potri.004G017500 ID=Potri.004G017500.1.v4.1 annot-version=v4.1 ATGGAAGGCAACGAGCAATTTCCATGTCCGTCACCGTATCCCCAGCCGTTCAAAGACGTATCGAATTTCAAAACCCCAAAACGCCCTCCAAATCTCTCCA AATTTACTTCTCCGAGCTCTCAATTCTTCACTGCTTCAAAACGAACCCCAATGTCCTCCTCCTCCTTCCGTCCTTCCTTATCAGGCCAGTCCAGGCCCAA GCCTGCTTCAACCACGGCCCGGAGAAGGCTCAAGGCGTTCGAGATCGAGCAGTCACAGTCATCAAGAAAGGCACAGATTAGGAAAGAACAGGCGCTGAAA ACACTGTCGAAATCTCTCACTACTTGGATTAATTTCCTGTTCGAAAACCCTAGTGCTTGTGGGTGCTCTTGCAATTTCACCCAGAATGCGGTGGTGGGGC CCAGTGTTGTGGTGGGGTTGGGGAAGAGGGAAGGTGGGGCAGCCGGGGTGGGTGATACGTGGAGGAGTCCGAAGAGGAGTAGGGATGTGACGTGGCAAGG AGGAGGGGGTGGTGGGGATGGTGACGTGTTGAATTTTAAGAGGTATGGAAAATTGAAGGAGGGATTGAAGGAAGTGTGTAGTGTGGAGGATTTGATGGAG AGAATGAGGGTTTATTTGAGTTTGGGATGTTGTAAGGAAGTTTTTGATGCTATGGTTCTTGTTGTTAAGACTATAGATGAAGGGAGGTTGAAAATGAAGC CACATTGTCCTATTGTAACAGATTTTGGCATGAAGGAGAAAGCCATGCGAATTCTCATGTGCTATAATCCAGTTTGGCTTCGAATTGGATTACAAATTAT TCTTGGTGGCGATTCCTTGTTGCCCAGTGGAGATATTGATTCTGATCAAGAAATATCATTCTTGAAGATGGTGATAGAGAAACAATTTCTTTCACATACT GGACTAGCAAAAACTTATGCTTATAACAGGAAGGTTGAAGGGTTATATAGACCAGGTTACTATGAGTCCTTGGGAAATGTTATATTGAAGAGGTTTTTGC TGCTGGTTCTTATTCTAGATAGAACTAAATTACAGAGTGGTCTTTCTTTAAAGTATGGAATTGATGGAGTAGATGGGGGTTCACCTCTTCTGTTCGTTGT GCAGTCTAGTATAAAGTCTAGCCGTCAAATGATTAATGATTTCTTATCATCGGAGGTAATGCACGGAGAAGGGAATCTTCTTGCACATCTAGTGGTCATA GGTTACAAAGTATCTTATCAACAGTGTTCCCTCGTTGAGTATGACTTCAGAGTGACAGATTTATTTGCGGAGCTTCAAGATGGAGTGAGGCTTTGTAGAG CCATCCAGCTCTTACAAAATGATTCCTCTATTCTTATGAAAATGGTAGTTCCATCAGATACCCGCAAGAGAAATTTAGCAAATTGTGGCCTTGCCCTGCA ATATCTAAAGCGTGCTGGTGTAACATTGCAAGATGAAGATGGAATGACAATCTTGGAAGACGATGTTGCTAATGGAGATATGGAGCTAACTGTTTCTTTG CTCTGGAACATGTTTGTTCACTTGCAGTTGCCTCTTCTGCTCAACAAAACAACCTTAGCAAATGAAATTTTGAAAATTCACGGAGTTAACATGGACTCCG CTAACATCAGTCCTGGTTCCTCTCCTTTGGAGTTGCTTTTGAGTTGGATTCAGGCAGTTTGTGGAAAATATGATAATAAAATTGATAATTTTGCTTCGTT GGTTGACGGTAAAGCCATATGGTGTTTGCTTGACTACTATTTCCGTAAAGAACTTTCTTGTTCTCATTCTCCAAAGGATCCTCATGAAAGTAGAAGAGAA GAATCACTTATGTCAGCTATTGATTATACAGATTCAGTCCACAATTTCTTATTGTCACAGAAGCTTACAACATTACTGTGGAATTTTCCTGAGGTTCTTC ATATCAGTGACATTCTTGAACATAGTGGCGCAATTAATCATCGAAGTGTGGTAATTTTATTGGTGTTCCTCTCATCACAACTGACTGTAAAGAAAACCAT GGATCAACTGAATTTCCATAAACTATTGTGTTGTGATTGTCAAGAGAGGAGAACTTCAAGCGTTGGTAGGTGTTCTTTAAGTTCAGAAGCAGAGCTGGAC CAAGACATAATAGATGGCTCCAGTACAGAAGATGCTGCTAGAAAGTTTAGGGCTATTAAGGCTTGGTGGCAAGATATGGCGGAACGAAACAACAAATTCA TCACACAACCTGGTACTTCTGTTTTGGATTGCAACTCAACTAGCAATCTGGGCATCATCAGTCAAAGAGAAAATGCTGCAAAAGTAATACAATCGCACTT TAGGAGATCAGTTGAACGCCATAACTTTTTGAAGATGAGAAGAGCGGCTTCCTTTTTGCAAACTGCTATTCGGGCTTGGTTAATGGTGAAGAAGAGACCA TTCCTTTTAAAATTCAGTAGTGTCACGGTTCAGGATTTTAGATGTGAAAGGTGGAGCCAGGCTGAAAATCTAGGGAGATATGTGAAGTTCATTGTTGACC GGCATAGATTTGTCAAGCTACGAAGAGATGTTATGCTTATTCAGAAAGCCACGAGGATTTGGATCAGACAAAGACATAAAAGTGATTGTGTTGGTAATCT TGATGTATCCACTCTTGATATAGTCAATGCTGCCATTGCTGTTCAGAAATTCATTCGTGGTTGGGCAGCAAGGTCTAGGTATAAGGATGTTCAATTGGAA AAGGCTTCATCCACGTGCCAATTTGATGGTCTAACAGTTCAGCTTTCTTCAAAGACTATAATTTCCAGGTCCATCCACGAACAGCAGCTTGCTGCTACTA AAATTCAAATTCATTTCCAAGGTTGGCTGTTGAGAAGGACATTTTTAATCCGGAAGCAAGCTATAATGAAAATTCAAAGTAATTATAGATGCTTAAGATG TCGGAGGGCTTTTCAACAATTTTGTATTGCTAAAAAGTCAGCCATTGTTATTCAGTCTTGTGTTCGTGGATGGATTGTAAGGAGAAAAGTGGGAAGATAT CGGTATCTCATTGGTGTGCTTCAAAGATACTGCCGGGCTTGGCTAATAAGGAGGGACTTTTTGTTCCAAAAACAAGCAGCAACACAGATTCAAAGTGCTA TTCGATGTTTAAACTGCAGGACAGCATTTAAGTCTTGCAAAGATGCTACGATTGAAATTCAACGGTTTGTCAGGGGACATACTACTCGGAATAGGCTATT AGGGGCTTCTCACTTTTCTGGAGGCATTGCTAGTTACGGAAATTTTCTAACCTCAGGAGTCTGCTTTCAGAGCTTGAAACTGAAAGTAATGATGTCTTCA GTTTTGAAGCTACAAAGGTGGTGGAGAGGCATTCTATTTCTTAAACTCAGAACAAAGTCTGCAATTGTTATACAAGCTCATATTCGAGGTTGGATTGGCA GGCAAATGGCCTCTAGAGAGAGGCAATGTGTTGCTCTCCAAAGAGAAGCAGTGTTAAAAATCCAAAGTGCTGTTCGATGTTTGAACTGCTGGAAGGCGTT TCATTGCTGTAAACAAGCTGCTATAGAGATTCAGGGGTTTGTCAGAGGGGAGATTACTCGAAATAGGCTATTAGGGGCTTCTCACTTTCATAGAGCTACT GCTAGTTATTGCAAAATGCAAACCTCAAGAGTCTGCTTGCAGAGTTTGGAATTGAAAATAGTGATGTCTTCTATTCTGAAGCTGCAAAGGTGGTGGAGAG GTGTTTTGTTGCTGAAGCATAGAGCAAAATCAGCAATCCTCGTACAGTCTCATGTTCGAGGTTGGATTGGCAGGAAAAAGGCCTCTAGAGAGAGGCAGCG CGTTGTAGTGGTTCAATCGCACTGGAAAGGTTTCCTTGCACGTAAAAATGCTAGAGGGCAGCTCCTGGATTTGCGCCTGAGAATGCAAAATTCTGCTAAA AATGTGGATGACAGCATGCGTATTATTAACAGGCTCATAGTGGCTCTTTCAGAACTATCAAGCATGAAAAGTGTTAGTGGCATTCTTCACACTTGTGCAA CTTTGGATATGACTACAGAACACTCTCAAAAATGTTGTGAGAAACTTGTGGCTGCTGGGGCAATTGACAACTTACTGAAGCTGATTCGCTCAGTCAGTCA AAGCATGCCTGACCAGGAGGTTTTAAAGCATGCACTCTCAGTTCTCCGGAATCTTGCCCGTTATCCACATTTGATTGAAGTGCTTATTGACAGTCAAGGA GTAGTAGAAATAATTCTTTGGCAATTGCTCAGGAACAAGGAGGAAGGATATTTCATTGCTTCTGAGGTTATGAAGAAGATCTGTTCACATCAAAAAGGCG TTGAAATGGTGCTGAGGAAACCACCCATTATAAAGAGGCTACACAGTCTTGTGGAAGAATTAACAAGGAAGGCAAACTTCGAGAAGAAGAAACCTCGCGG CATGGCAGTGAGGGACAACATGGAAAGAAGATTACGGGAGGCCGTCGAACTTTTGAAACTGATAAATAGCAAACTTTGGTAG
AA sequence Show only first row Show all	>Potri.004G017500.1 pacid=42794550 polypeptide=Potri.004G017500.1.p locus=Potri.004G017500 ID=Potri.004G017500.1.v4.1 annot-version=v4.1 MEGNEQFPCPSPYPQPFKDVSNFKTPKRPPNLSKFTSPSSQFFTASKRTPMSSSSFRPSLSGQSRPKPASTTARRRLKAFEIEQSQSSRKAQIRKEQALK TLSKSLTTWINFLFENPSACGCSCNFTQNAVVGPSVVVGLGKREGGAAGVGDTWRSPKRSRDVTWQGGGGGGDGDVLNFKRYGKLKEGLKEVCSVEDLME RMRVYLSLGCCKEVFDAMVLVVKTIDEGRLKMKPHCPIVTDFGMKEKAMRILMCYNPVWLRIGLQIILGGDSLLPSGDIDSDQEISFLKMVIEKQFLSHT GLAKTYAYNRKVEGLYRPGYYESLGNVILKRFLLLVLILDRTKLQSGLSLKYGIDGVDGGSPLLFVVQSSIKSSRQMINDFLSSEVMHGEGNLLAHLVVI GYKVSYQQCSLVEYDFRVTDLFAELQDGVRLCRAIQLLQNDSSILMKMVVPSDTRKRNLANCGLALQYLKRAGVTLQDEDGMTILEDDVANGDMELTVSL LWNMFVHLQLPLLLNKTTLANEILKIHGVNMDSANISPGSSPLELLLSWIQAVCGKYDNKIDNFASLVDGKAIWCLLDYYFRKELSCSHSPKDPHESRRE ESLMSAIDYTDSVHNFLLSQKLTTLLWNFPEVLHISDILEHSGAINHRSVVILLVFLSSQLTVKKTMDQLNFHKLLCCDCQERRTSSVGRCSLSSEAELD QDIIDGSSTEDAARKFRAIKAWWQDMAERNNKFITQPGTSVLDCNSTSNLGIISQRENAAKVIQSHFRRSVERHNFLKMRRAASFLQTAIRAWLMVKKRP FLLKFSSVTVQDFRCERWSQAENLGRYVKFIVDRHRFVKLRRDVMLIQKATRIWIRQRHKSDCVGNLDVSTLDIVNAAIAVQKFIRGWAARSRYKDVQLE KASSTCQFDGLTVQLSSKTIISRSIHEQQLAATKIQIHFQGWLLRRTFLIRKQAIMKIQSNYRCLRCRRAFQQFCIAKKSAIVIQSCVRGWIVRRKVGRY RYLIGVLQRYCRAWLIRRDFLFQKQAATQIQSAIRCLNCRTAFKSCKDATIEIQRFVRGHTTRNRLLGASHFSGGIASYGNFLTSGVCFQSLKLKVMMSS VLKLQRWWRGILFLKLRTKSAIVIQAHIRGWIGRQMASRERQCVALQREAVLKIQSAVRCLNCWKAFHCCKQAAIEIQGFVRGEITRNRLLGASHFHRAT ASYCKMQTSRVCLQSLELKIVMSSILKLQRWWRGVLLLKHRAKSAILVQSHVRGWIGRKKASRERQRVVVVQSHWKGFLARKNARGQLLDLRLRMQNSAK NVDDSMRIINRLIVALSELSSMKSVSGILHTCATLDMTTEHSQKCCEKLVAAGAIDNLLKLIRSVSQSMPDQEVLKHALSVLRNLARYPHLIEVLIDSQG VVEIILWQLLRNKEEGYFIASEVMKKICSHQKGVEMVLRKPPIIKRLHSLVEELTRKANFEKKKPRGMAVRDNMERRLREAVELLKLINSKLW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	0	1
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	1.41	0.9637
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	1.41	0.9645	TOP2.2
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	1.73	0.9542
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	3.46	0.9364
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	4.00	0.9533
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	5.47	0.9342
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	8.12	0.9462
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	11.40	0.9374
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	11.40	0.9522
AT5G02370			ATP binding microtubule motor ...		Potri.006G085300 [exp]	12.40	0.9259

Compare expression of checked genes

Potri.004G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.