Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 317 / 2e-103 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 285 / 4e-91 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G45340 238 / 3e-73 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 231 / 1e-70 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G13730 229 / 3e-69 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G19270 218 / 2e-65 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 211 / 2e-62 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G36380 208 / 3e-61 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G19630 195 / 1e-56 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT2G32440 195 / 1e-56 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001300 [exp] 702 / 0 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001500 [exp] 685 / 0 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017700 [exp] 651 / 0 AT5G36110 304 / 2e-98 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 649 / 0 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G137950 [exp] 416 / 5e-143 AT5G36110 261 / 7e-83 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G425675 [exp] 391 / 1e-133 AT2G42850 246 / 4e-77 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.019G057901 [exp] 374 / 2e-125 AT5G36110 279 / 2e-88 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.012G115000 [exp] 370 / 5e-124 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 335 / 2e-110 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040055 [exp] 493 / 2e-172 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10010940 [exp] 285 / 8e-91 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10035685 [exp] 217 / 4e-65 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10018898 [exp] 214 / 1e-63 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10042652 [exp] 214 / 1e-63 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040193 [exp] 213 / 2e-63 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10036670 [exp] 213 / 2e-63 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033308 [exp] 211 / 8e-63 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 211 / 1e-62 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 211 / 1e-62 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G017800.1 pacid=42794861 polypeptide=Potri.004G017800.1.p locus=Potri.004G017800 ID=Potri.004G017800.1.v4.1 annot-version=v4.1 ATGGATCCTGCAATGATTTTCTTCTTGCTTCTTTTACTTCTCCCACTTTACCTTCTCCTGAGCCATAAAAGACCAAAAGGGCTTCCACCAGGTTCTTTGG GATTGCCCATCGTAGGCCAAAGTTTGAGCTTCCTCCGTGCTATGCGCGAAAACACAGCAGAACAATGGCTTCAGAATAGAATAGACAAATATGGCCCCAT CTGGAAAATGAGCCTCTTTGGGAAACCGACAGTGTTCCTGTGTGGACAGGCAGCAAACAAGTTCATCTACACTTGTGATGGTACCAAACTTGCCAGTCAG AAACCATTATCGGTAAGGAGGATTTGTGGAGATAAGAATATCCTTGAATTAAGTGGCCATGAGCACAAGCGTGTGAGAGGTGCACTTGTATCGTTCTTAA AGCCTGAAGCGTTGAGGCAATACGTTGGTAAGATGGATGAAAGAGTCAGAAAGCATTTGGAGATGCATTGGCATGGCAAGCAGAAGGTTTCGGCAATGCC ATTGATGAAGATCCTTACCTTCAACATTATGAGCTCACTGATAATGGGAATAGAAGAAGGTGCAAAACGTGACATGCTTGTAGGGCTCTTCCAACAACTG ATCAAGGGTTCTCTATCCGTACCAATCAATTTTCCCTTCACACGCTTCAGTCGTAGCCTGCAAGCAAGTAGAAAAATAAGGATGATCCTCGCGGATCTTA TACGTGAAAGAAGGGCTGCGCAGAAGGAGCAAACTGCCTTTCCTCAACAAGATCTTATCACCACCTTGCTTAATCTCAGAAATGAGGACTCTTCAGCGGC TTTATCTGATGAGGAAATTGTAGATAATGCTATCACTATAATGATAGCAGGACATGACACGATCTCTGTCCTCCTTACCACATTGATTAGACACTTAGCA AATGATCAAGCTGTTTATGCTGGGATTGCTCAAGAACAAGAGGATGTTGCCAAGAGTAGGGCCTCTGGAGAGCTTTTAACATGGGATGATCTTGCAAGAA TGAAATACACATGGAGGGTAGCATTGGAATGTCTAAGGATGTTCCCTCCTGTATTTAACTCCTTTAGGAAGGTCCTTGAAGATCTCGAATATAAAGGGTA CCTTATTCCCAAAGGATGGCAGGTAACCTGGGCAGCCTCCATGACACACATGGATGAGTCTCTCTTCCCAGATCCAACGAAGTTTGATCCAAACCATTTC GATACAAAAATCCCCCCATATAGTTTTGTTGCATTCGGGGGAGGAGCACGCATATGTCCTGGATATGAATTTGCAAGACTTGAAACTCTGATCACAATAC ATCACCTGGTGAACAGGTTCACATGGAAGCTCCGTTGCCCAGACATTTCTTTTTCCAGAGATCCAATGCCAACTTTCAAGGATGGACTAGAGATAGAAAT TGTCCCAAAGCTCTCTCTCAAAGTCAACTGA
AA sequence Show only first row Show all	>Potri.004G017800.1 pacid=42794861 polypeptide=Potri.004G017800.1.p locus=Potri.004G017800 ID=Potri.004G017800.1.v4.1 annot-version=v4.1 MDPAMIFFLLLLLLPLYLLLSHKRPKGLPPGSLGLPIVGQSLSFLRAMRENTAEQWLQNRIDKYGPIWKMSLFGKPTVFLCGQAANKFIYTCDGTKLASQ KPLSVRRICGDKNILELSGHEHKRVRGALVSFLKPEALRQYVGKMDERVRKHLEMHWHGKQKVSAMPLMKILTFNIMSSLIMGIEEGAKRDMLVGLFQQL IKGSLSVPINFPFTRFSRSLQASRKIRMILADLIRERRAAQKEQTAFPQQDLITTLLNLRNEDSSAALSDEEIVDNAITIMIAGHDTISVLLTTLIRHLA NDQAVYAGIAQEQEDVAKSRASGELLTWDDLARMKYTWRVALECLRMFPPVFNSFRKVLEDLEYKGYLIPKGWQVTWAASMTHMDESLFPDPTKFDPNHF DTKIPPYSFVAFGGGARICPGYEFARLETLITIHHLVNRFTWKLRCPDISFSRDPMPTFKDGLEIEIVPKLSLKVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017800 [exp]	0	1
					Potri.015G084300 [exp]	1.00	0.8740
AT2G04050			MATE efflux family protein (.1...		Potri.004G094650 [exp]	8.71	0.8021
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137550 [exp]	9.79	0.8563
					Potri.016G037100 [exp]	10.24	0.8050
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	11.83	0.7826
AT4G38040			Exostosin family protein (.1)		Potri.007G117800 [exp]	12.80	0.7396
AT5G25160	C2H2ZnF	ZFP3	zinc finger protein 3 (.1)		Potri.018G123800 [exp]	26.26	0.7932
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G010200 [exp]	27.92	0.6455
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.007G044600 [exp]	40.21	0.7656
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	44.21	0.7714

Compare expression of checked genes

Potri.004G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.