Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 167 / 5e-48 HXXXD-type acyl-transferase family protein (.1) AT5G23970 159 / 4e-45 HXXXD-type acyl-transferase family protein (.1) AT5G47950 157 / 2e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 153 / 8e-43 HXXXD-type acyl-transferase family protein (.1) AT1G24430 152 / 1e-42 HXXXD-type acyl-transferase family protein (.1) AT4G15390 151 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT1G24420 140 / 7e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47980 109 / 1e-26 HXXXD-type acyl-transferase family protein (.1) AT4G15400 100 / 1e-23 HXXXD-type acyl-transferase family protein (.1) AT5G41040 83 / 2e-17 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017600 [exp] 499 / 7e-178 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 348 / 1e-118 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 257 / 2e-82 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 252 / 1e-80 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 248 / 5e-79 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 245 / 4e-78 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.015G127000 [exp] 233 / 3e-73 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 230 / 2e-72 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 211 / 6e-65 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 188 / 8e-56 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 186 / 3e-55 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 160 / 3e-45 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 157 / 3e-44 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 149 / 3e-41 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 146 / 3e-40 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 145 / 1e-39 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 146 / 5e-39 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 142 / 2e-38 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 129 / 1e-33 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.004G017900.2 pacid=42794185 polypeptide=Potri.004G017900.2.p locus=Potri.004G017900 ID=Potri.004G017900.2.v4.1 annot-version=v4.1 ATGGAGGTTCAGCTCATATCTAGAAAGCTAATAAAACCATCAGTTCAAACTCCTCCTCACCTTCAGAATCTGAACATATCATTTCTCAATCAGCTTGCTC CATCACTGTATGTAGCCAATATTTTCTACTACCCTAGCCACCGCCATGAAATCATCAAAAACATCGACAGGCTAGAGAAATCCTTGTCCGAAATATTAAC CCTCTTTTACCCTCTAGCGGGAAGATACATCAAAGATAATCTCTCAGTTGATTGTAATGATGAGGGGGTGGAACTCTTGGAGGCCAAAGTTGATGGAGTA GACCTCACACAAATTGTCCAACAAGATCCCAATACCATTCAAATTAACAAGTTTAAGTGTGGAGGTTTAGCGATTGACTTGCGCAATTCGCACAGGATAT CTGATGGAATTACAATCTCGACATTCATCAATGCATGGGCTACAACATTCCGAGAAGCACCAAAAGTCTATTCGAAGATTGTCACAAAAGTATTTGTGAT TAACAAGGAAGCCATAGACAAGCTGAATTCTAAAATTAGTGGTGGTAGCGATTCAGGGGTCAAGTACCATCCGTCGCGCTTGGAGGTGGTCACAGCACTT TTATGGAAGGTTCTCATTGGTTCGGCTAAAGCACAGCGCGGACACCTGAGGGCATCTTCACTTCTTCAGATAATGACTTTGAGAGGAAAGGTGAGTATGC CTTTACCTGAAAATTGTTGTGGAAACATGCTGCTGAGGGATGCTAAGAGGAAAGCCAATTCAGATTGCGCAAATGCAATAAACAAGTTCTATGAAGAATT GAACAAGGGGGAACTAAACTTTGGCTGGGGAAAGCCTGCATGGATGAGTGCAGTGCAATTAACTTTAGAATTTGGTATTCTGAAGGACAACAAATTTGGA GATGGAATTGAGGCATGGATGAACTTAAAGGAAATTGATATGCTTCACTTCCAACAAGATCCGGACATGTTGGCCTTGACCTCCTCACAGTAG
AA sequence Show only first row Show all	>Potri.004G017900.2 pacid=42794185 polypeptide=Potri.004G017900.2.p locus=Potri.004G017900 ID=Potri.004G017900.2.v4.1 annot-version=v4.1 MEVQLISRKLIKPSVQTPPHLQNLNISFLNQLAPSLYVANIFYYPSHRHEIIKNIDRLEKSLSEILTLFYPLAGRYIKDNLSVDCNDEGVELLEAKVDGV DLTQIVQQDPNTIQINKFKCGGLAIDLRNSHRISDGITISTFINAWATTFREAPKVYSKIVTKVFVINKEAIDKLNSKISGGSDSGVKYHPSRLEVVTAL LWKVLIGSAKAQRGHLRASSLLQIMTLRGKVSMPLPENCCGNMLLRDAKRKANSDCANAINKFYEELNKGELNFGWGKPAWMSAVQLTLEFGILKDNKFG DGIEAWMNLKEIDMLHFQQDPDMLALTSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	0	1
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	7.21	0.9324
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	9.32	0.9377
					Potri.001G076050 [exp]	9.94	0.9086
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	12.32	0.8496
					Potri.004G234150 [exp]	15.09	0.9288
AT4G30100			P-loop containing nucleoside t...		Potri.002G093500 [exp]	19.44	0.8587
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.002G169600 [exp]	20.44	0.8865
AT1G31240			Bromodomain transcription fact...		Potri.012G119500 [exp]	23.83	0.9116
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	23.87	0.9049
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	24.00	0.8375

Compare expression of checked genes

Potri.004G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.