Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61870 421 / 4e-146 PPR336 pentatricopeptide repeat 336 (.1) AT1G11630 350 / 4e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 162 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 154 / 5e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 144 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 142 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 140 / 9e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 121 / 2e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 120 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 115 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001100 [exp] 605 / 0 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1) Potri.011G032500 [exp] 177 / 1e-51 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 175 / 7e-51 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 171 / 4e-49 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 164 / 2e-46 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 162 / 6e-46 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 160 / 2e-45 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 155 / 4e-43 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 155 / 6e-43 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020055 [exp] 452 / 2e-158 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10006769 [exp] 326 / 8e-111 AT1G61870 326 / 7e-111 pentatricopeptide repeat 336 (.1) Lus10019119 [exp] 154 / 6e-43 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 144 / 6e-39 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 140 / 2e-37 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 137 / 1e-36 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 135 / 6e-36 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 132 / 1e-34 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 133 / 2e-34 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041727 [exp] 130 / 2e-34 AT4G36680 360 / 8e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G018000.1 pacid=42794138 polypeptide=Potri.004G018000.1.p locus=Potri.004G018000 ID=Potri.004G018000.1.v4.1 annot-version=v4.1 ATGGCACTCTTCGCTCGCCTCCGCCTCCAATCCATACTCCCCCTCCGCCGCCTCCACCACCACCACCTTAACTTCTCCACCTCCCCACTCTCCTCCATAT CCAAGACACGCGTGGCCCTCTCCCGCCTAAAAACCGAAACCAACCCTGAAAAAATCCTCGAGATCTGCCGATCCGCTTCCCTAACTCCCGAAGCCAACAT CGACAGAATCACTTTCTCAGTCGCCATTGACAAGCTCGCCAAATCCAACAACTTCTCTTACATCGACGAGCTCCTTACTGAACTCCGCACTTCACGCCCT GATCTCCGCACCGAACAATTCGCAGCTCATTCCATCGTCCTCTTCGGAAAAGCTGGTATGATCGATCATGCAATTCGGCTTTTTAAGGAATATCACGAGA AGAATCAAAATGGCGTCGTTTTATCTTCTGGATCAGTGAAATTATTAAATTCTTTGCTTTATTCGTGTATTTTAGCGAAAAAATATAATGAAGTGAAAAG GGTTTTTGTTGATTTTACTAAGAGTTTTAAAATCGAGCCGAATTTGGATACTTATAATACAATAATTCAGGCTTTTAGTGAGGGTGGGAGTTCGAGTTCG TGTTATTCGATTTTGAATGAGATGGATAAGAAGGGAGTGAAGCCGAATACGACGACAATTGGGAATTTGATTACTGGGTTTTATAAGGAAGAGAAGTATG AGGATGTAGGGAAAGTATTGAAAATGATGGAGGAGGATTATGGGACAAAAGCTGGGATTGATATTTATAATATTAGGATTCGGAGTTTGTGTAAACTTAA GAGGTCGAAAGAAGCGGAGGCATTGCTAGGAGGGTGTATAGCGAGAGGAGTGAAGCCGAAAGCGGTCACTTATAGGTATTTGATTTTTGGGTTTTGTAAG GAAGGTGATTTGGAGGGAGCTAAGAGTTTGTTTAAGAGTATGGTGAATAGAGGGTGTAAACCGGATTATTATTGTTATGCCACTCTGGTTTGCTTTTTAA GTAAAGGCAGGGATTTTGAGTCGGCGTATAGGATTTGTAAGGAGAGTATGGAGAAGAAGTTGGTGCCAAATTCTTCAACTATGAAGATGTTAGTGGAAGG ACTTGCGAGTAGCGGGAATGTGGAGAAGGCTAAAGAGCTTATTGGAGAAATAAAAGAGAAGTTTTCGAAGAATGTTGAGTTGTGGAATGAGGTCGAAGCG GGGTTGCCGCAGTAG
AA sequence Show only first row Show all	>Potri.004G018000.1 pacid=42794138 polypeptide=Potri.004G018000.1.p locus=Potri.004G018000 ID=Potri.004G018000.1.v4.1 annot-version=v4.1 MALFARLRLQSILPLRRLHHHHLNFSTSPLSSISKTRVALSRLKTETNPEKILEICRSASLTPEANIDRITFSVAIDKLAKSNNFSYIDELLTELRTSRP DLRTEQFAAHSIVLFGKAGMIDHAIRLFKEYHEKNQNGVVLSSGSVKLLNSLLYSCILAKKYNEVKRVFVDFTKSFKIEPNLDTYNTIIQAFSEGGSSSS CYSILNEMDKKGVKPNTTTIGNLITGFYKEEKYEDVGKVLKMMEEDYGTKAGIDIYNIRIRSLCKLKRSKEAEALLGGCIARGVKPKAVTYRYLIFGFCK EGDLEGAKSLFKSMVNRGCKPDYYCYATLVCFLSKGRDFESAYRICKESMEKKLVPNSSTMKMLVEGLASSGNVEKAKELIGEIKEKFSKNVELWNEVEA GLPQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	0	1
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	2.00	0.8842	Pt-TUFA.3
AT1G14060			GCK domain-containing protein ...		Potri.013G109100 [exp]	2.00	0.8552
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	2.64	0.8380
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	3.46	0.8596
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	4.24	0.8608
AT5G02740			Ribosomal protein S24e family ...		Potri.006G215800 [exp]	5.09	0.8109
AT3G49890			unknown protein		Potri.001G172500 [exp]	8.36	0.8468
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	8.48	0.8397
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	8.94	0.8240
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Potri.013G123700 [exp]	9.38	0.8158

Compare expression of checked genes

Potri.004G018000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.