Plant FIBer expression Database

TOM1.2 (Potri.004G018100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TOM1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21790 463 / 2e-166 ATTOM1, TOM1 tobamovirus multiplication 1 (.1)
AT2G02180 347 / 1e-120 TOM3 tobamovirus multiplication protein 3 (.1)
AT1G14530 319 / 2e-109 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2)
AT3G59090 52 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G001000
[exp]
497 / 4e-180 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1)
Potri.008G144400
[exp]
344 / 2e-119 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1)
Potri.010G097900
[exp]
342 / 2e-118 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1)
Potri.005G203600
[exp]
50 / 8e-07 AT3G59090 362 / 2e-124 unknown protein
Potri.002G058500
[exp]
43 / 0.0002 AT3G59090 330 / 9e-112 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006770
[exp]
479 / 1e-172 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1)
Lus10007663
[exp]
473 / 2e-170 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1)
Lus10020054
[exp]
473 / 2e-170 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1)
Lus10018348
[exp]
468 / 2e-168 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1)
Lus10004930
[exp]
44 / 0.0001 AT3G59090 237 / 6e-75 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06454 DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence
>Potri.004G018100.2 pacid=42794374 polypeptide=Potri.004G018100.2.p locus=Potri.004G018100 ID=Potri.004G018100.2.v4.1 annot-version=v4.1
ATGGGAAGGATAATTAAAATGCCGGTGGAGTTACCGGCGATGGAGATTGGAGCTATGGTCGGCGACTGGTGGGAAGAGATCAACGAGTCGACTCAATGGC
AAGACGGAATTTTCTACGCTCTCTGTGGCGCTTACGCTCTTGTTTCCGCTGTTGCTTTGATTCAATTAATAAGGATTGAATTGAGAGTGCCGGAGTACGG
ATGGACGACGCAGAAAGTTTTTCATCTCATGAATTTTATCGTTAATGGAGTGAGGGCGATTGTATTTGGATTTCATAAGCAAGTATTTACTATGAATCCT
CAGGCATTGGTGTTGGTATTATTGGATCTACCAGGGCTCCTGTTCTTTTCGACGTATACTCTTCTTGTTCTATTTTGGGCTGAGATATATCATCAGGCGA
GAAGTTTGCCGACGGATAAGCTTAGGGTTGTTTATATTTCAGTCAATGTTGCAATGTACTTCGTTCAGGTTTGCATCTGGGTGTACCTTTGGGTAGACGA
CAACAGCATTGTGGAATTAATTGGAAAGATATTTATTGCAGTTGTGTCAATCTTAGCTGCATTAGGTTTCTTGGTGTATGGGGGAAGATTATTTTTCATG
CTCAGACGCTTCCCTATTGAATCTAAAGGGAGAAGAAAGAAGCTTCATGAGGTTGGATCAGTCACAGCCATATGCTTCACTTGCTTCCTTATACGATGTT
TTGTGGTCTTTCTATCTGCATTTGATGCAGATGCCTCACTTGATGTTCTGGATCATCCAGTTTTGAACTTGATCTATTACATGCTCGTCGAGATTCTACC
GTCAGCTCTAGTGCTCTTCATCCTGCGGAAGTTGCCTCCAAAGAGAATATCAGCACAATATCACCCAATTCGTTAG
AA sequence
>Potri.004G018100.2 pacid=42794374 polypeptide=Potri.004G018100.2.p locus=Potri.004G018100 ID=Potri.004G018100.2.v4.1 annot-version=v4.1
MGRIIKMPVELPAMEIGAMVGDWWEEINESTQWQDGIFYALCGAYALVSAVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAIVFGFHKQVFTMNP
QALVLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRVVYISVNVAMYFVQVCIWVYLWVDDNSIVELIGKIFIAVVSILAALGFLVYGGRLFFM
LRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVFLSAFDADASLDVLDHPVLNLIYYMLVEILPSALVLFILRKLPPKRISAQYHPIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21790 ATTOM1, TOM1 tobamovirus multiplication 1 (... Potri.004G018100
[exp]
0 1 TOM1.2
AT1G06230 GTE4 global transcription factor gr... Potri.011G096400
[exp]
1.00 0.7658
AT5G08415 Radical SAM superfamily protei... Potri.013G136000
[exp]
1.73 0.7421
AT5G50390 EMB3141 EMBRYO DEFECTIVE 3141, Pentatr... Potri.015G095100
[exp]
8.12 0.6993
AT2G01480 O-fucosyltransferase family pr... Potri.008G130600
[exp]
11.74 0.7580
AT4G11610 NTRB, ATNTRB C2 calcium/lipid-binding plant... Potri.003G125900
[exp]
12.24 0.7232
AT1G32260 unknown protein Potri.001G138200
[exp]
15.36 0.7366
AT2G44900 ARABIDILLO-1, A... F-box Armadillo protein 1, ARA... Potri.001G079300
[exp]
16.06 0.7155
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.005G146700
[exp]
20.19 0.7030 Pt-XF1.2
Potri.006G222400
[exp]
21.79 0.6639
Potri.010G023150
[exp]
32.37 0.5877

Potri.004G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.