Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04860 410 / 5e-147 DER2.2 DERLIN-2.2 (.1) AT4G21810 401 / 1e-143 DER2.1 DERLIN-2.1 (.1) AT4G29330 143 / 1e-41 DER1 DERLIN-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000900 [exp] 454 / 2e-164 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.006G153000 [exp] 124 / 1e-34 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 124 / 4e-34 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 123 / 6e-34 AT4G29330 293 / 8e-100 DERLIN-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018347 [exp] 427 / 1e-153 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10006771 [exp] 424 / 1e-152 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10020053 [exp] 424 / 3e-152 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10007664 [exp] 351 / 4e-124 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1) Lus10034990 [exp] 140 / 2e-40 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10012934 [exp] 134 / 8e-38 AT4G29330 347 / 2e-120 DERLIN-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF04511 [poplar] [flax] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Potri.004G018200.3 pacid=42796348 polypeptide=Potri.004G018200.3.p locus=Potri.004G018200 ID=Potri.004G018200.3.v4.1 annot-version=v4.1 ATGGCTCAAGCAGTGGAGGATTGGTATAAGCAGATGCCAATAATCACTCGCTCTTATGTCACTGCTGCTGTTGTTACCACCATTGGTTGCTCTCTTGATA TAATATCTCCGTCTAACCTTTACTTGAACCCCAGACTTGTGATGAAGAATTATGAGTTCTGGCGCCTCGTCACTAATTTCCTTTACTTCCGTAAAATGGA CTTGGACTTTATGTTCCACATGTTCTTTCTTGCTCGATATTGCAAACTTCTTGAAGAGAACTCTTTTAGGGGAAGGACTGCAGATTTCTTTTACATGCTC TTGTTTGGTGCCACTGTTTTGACTAGCATTGTCATAGTTGGAGGAAACATACCCTATCTGTCAGAATCTTTTGCAAAAATCATATTCCTGAGCAATTCAT TGACATTCATGATGGTTTATGTTTGGAGCAAGCAAAACCCTTTTATCCACATGAGTTTCTTGGGCATCTTTACTTTCACAGCAGCTTACCTTCCATGGGT TCTCTTGGGATTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTGGACCTACTGGGGATGACAGCGGGTCATGCTTACTACTTTCTTGAAGATGTATATCCA CGGATGACAGGTCGTCGGCCCTTACAAACACCAGGATTCATCAAATCAATGTTTGCAGATGAGGCTGTTGTGGTGGCACGGCCAGTAAACATCAGATTTG CCCCTCCACCTGCAGAAGAACTTCACCAAGATTGA
AA sequence Show only first row Show all	>Potri.004G018200.3 pacid=42796348 polypeptide=Potri.004G018200.3.p locus=Potri.004G018200 ID=Potri.004G018200.3.v4.1 annot-version=v4.1 MAQAVEDWYKQMPIITRSYVTAAVVTTIGCSLDIISPSNLYLNPRLVMKNYEFWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYML LFGATVLTSIVIVGGNIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGIFTFTAAYLPWVLLGFSVLVGASAWVDLLGMTAGHAYYFLEDVYP RMTGRRPLQTPGFIKSMFADEAVVVARPVNIRFAPPPAEELHQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	0	1
AT5G27830			unknown protein		Potri.013G014800 [exp]	1.73	0.7504
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	6.24	0.7008
AT4G29480			Mitochondrial ATP synthase sub...		Potri.006G231900 [exp]	8.12	0.7299
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	8.48	0.6934
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.015G097400 [exp]	9.21	0.6829
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	9.38	0.6476
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	9.53	0.6789
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	12.96	0.6651
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.016G001200 [exp]	13.03	0.6346
AT1G03250			unknown protein		Potri.019G046400 [exp]	23.32	0.6360

Compare expression of checked genes

Potri.004G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.