Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20530 474 / 1e-167 Protein kinase superfamily protein (.1) AT1G61860 471 / 1e-166 Protein kinase superfamily protein (.1) AT5G02800 447 / 2e-157 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 441 / 6e-155 Protein kinase superfamily protein (.1) AT5G18610 444 / 2e-154 Protein kinase superfamily protein (.1.2) AT3G07070 441 / 3e-154 Protein kinase superfamily protein (.1) AT1G07870 436 / 3e-152 Protein kinase superfamily protein (.1.2) AT5G13160 433 / 8e-151 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT2G28590 425 / 6e-148 Protein kinase superfamily protein (.1) AT4G13190 412 / 1e-143 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000500 [exp] 665 / 0 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.011G000600 [exp] 574 / 0 AT3G20530 434 / 6e-152 Protein kinase superfamily protein (.1) Potri.004G018400 [exp] 515 / 0 AT3G20530 432 / 5e-152 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 488 / 3e-173 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 474 / 4e-168 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 458 / 1e-159 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 453 / 2e-158 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 453 / 2e-158 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 453 / 2e-157 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040050 [exp] 492 / 7e-175 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 480 / 5e-170 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 479 / 9e-170 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 469 / 7e-166 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 453 / 1e-157 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 453 / 1e-157 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011866 [exp] 449 / 2e-157 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10023473 [exp] 447 / 3e-157 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 447 / 4e-157 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 449 / 7e-157 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G018500.2 pacid=42795027 polypeptide=Potri.004G018500.2.p locus=Potri.004G018500 ID=Potri.004G018500.2.v4.1 annot-version=v4.1 ATGAGTCTCTTCTCTTGTTGCAGAATGGAAAAAAATAATTCTTTCAAGGGAAGCAGATCTTCATGGAACAGCAAGGGTTATGGAAAACAAGGCAAAACAT TGTCAATTGTCGGGAACATGTCTTATAAAATAACCTCCAGCAAAAGGAAGAATATTAATCAGGTTTTCACATTTCGTGAACTAGCTGTTGCAACTAGCAA TTTCAGTCATCATTGTCTAGTGGGAGAAGGTGGATTTGGAAGGGTGTATAAAGGATACATTGAGAACATTGATCAAATTGTTGCTGTTAAGAAGCTTGAC AGGAAAGGATTGCAAGGAAATAGAGAATTCTTTTCTGAGGTCCTTACGTTAAGCATGGTTAAACATCTGAATCTTGTCAAACTGATTGGCTATTGTGCAG ATGGTGATCAAAAACTCTTAGTTTATGAATTCATGGCCAATGGATCTTTGGAAAATCACCTTCTTGATTTACCTTCAGGAAAGGATCCTTTGGACTGGAG TACTAGGATGAAAATAGCATCAGGAGCAGCCCAAGGACTGGAATATTTGCACGGCGTTGCCGATCCTCAAATCATCTATCGGGATTTCAAAGCTTCAAAT ATATTATTAGATGAAGATTTCAATCCGAAGCTGTCTGATTTTGGACTTGCCAAGTTGGGACCAACAGGAGGGAAGGATCATGTGTCTACAAGGGTGATGG GTACATATGGCTACTGTGCTCCTGAATATCAAATGACAGGTCAGCTGACAACAAGGTCGGATGTGTATAGTTTCGGTGTTGTTCTTCTGGAGATAATTTC AGGAAGGAGAGTTATTGATAAGTCAAGACCAACAGAAGAGCAGAACCTAATTCATTGGGCAGCGCCGCTGTTGAAGGACAGAAGTAAATTTTCAGCAATG GCAGATCCATTACTAGAAGGAAACTACCCAAAAAAGAGTCTATATCAGGCTCTTGCAATAGCAGCCATGTGTGTCCATGAAGAAGCTGAAGCCCGACCTT TGATGGCTGATGTCGTAACCGCACTTGAATTTCTTACCAAACCAACTGAGGAGAAAAAAGCTACAATGGCATCAACAGAAAGCATCCATTACGTCGACTC TGTGAAAGGAGGAAATGCCAAGGAAGAGCTAGAAGCTTAG
AA sequence Show only first row Show all	>Potri.004G018500.2 pacid=42795027 polypeptide=Potri.004G018500.2.p locus=Potri.004G018500 ID=Potri.004G018500.2.v4.1 annot-version=v4.1 MSLFSCCRMEKNNSFKGSRSSWNSKGYGKQGKTLSIVGNMSYKITSSKRKNINQVFTFRELAVATSNFSHHCLVGEGGFGRVYKGYIENIDQIVAVKKLD RKGLQGNREFFSEVLTLSMVKHLNLVKLIGYCADGDQKLLVYEFMANGSLENHLLDLPSGKDPLDWSTRMKIASGAAQGLEYLHGVADPQIIYRDFKASN ILLDEDFNPKLSDFGLAKLGPTGGKDHVSTRVMGTYGYCAPEYQMTGQLTTRSDVYSFGVVLLEIISGRRVIDKSRPTEEQNLIHWAAPLLKDRSKFSAM ADPLLEGNYPKKSLYQALAIAAMCVHEEAEARPLMADVVTALEFLTKPTEEKKATMASTESIHYVDSVKGGNAKEELEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20530			Protein kinase superfamily pro...		Potri.004G018500 [exp]	0	1
AT3G20530			Protein kinase superfamily pro...		Potri.011G000500 [exp]	2.82	0.8775
AT1G33500			unknown protein		Potri.013G095400 [exp]	2.82	0.8936
AT1G55790			Domain of unknown function (DU...		Potri.011G141700 [exp]	3.74	0.8547
AT3G20530			Protein kinase superfamily pro...		Potri.004G018400 [exp]	7.21	0.8261
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	10.09	0.8866
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	10.95	0.8736
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.016G063800 [exp]	18.73	0.8145
					Potri.011G125251 [exp]	18.76	0.8223
AT1G29290			unknown protein		Potri.011G108101 [exp]	20.78	0.7855
AT4G36980			unknown protein		Potri.007G044100 [exp]	21.00	0.8379

Compare expression of checked genes

Potri.004G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.