Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61850 1781 / 0 phospholipases;galactolipases (.1.2) AT1G33670 57 / 4e-08 Leucine-rich repeat (LRR) family protein (.1) AT2G30105 54 / 4e-07 unknown protein AT1G12970 52 / 2e-06 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT2G26560 52 / 3e-06 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT1G72180 52 / 4e-06 Leucine-rich receptor-like protein kinase family protein (.1) AT1G33590 50 / 1e-05 Leucine-rich repeat (LRR) family protein (.1) AT5G07910 48 / 2e-05 Leucine-rich repeat (LRR) family protein (.1) AT4G35470 49 / 3e-05 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G26330 49 / 3e-05 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000200 [exp] 2257 / 0 AT1G61850 1796 / 0.0 phospholipases;galactolipases (.1.2) Potri.001G144100 [exp] 62 / 2e-09 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.001G280500 [exp] 60 / 5e-09 AT2G30105 503 / 1e-179 unknown protein Potri.007G042200 [exp] 56 / 1e-07 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.019G078400 [exp] 56 / 2e-07 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G128300 [exp] 55 / 2e-07 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.003G090100 [exp] 55 / 3e-07 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.019G131800 [exp] 54 / 1e-06 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G081400 [exp] 54 / 1e-06 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007661 [exp] 1940 / 0 AT1G61850 1855 / 0.0 phospholipases;galactolipases (.1.2) Lus10018349 [exp] 1860 / 0 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2) Lus10009340 [exp] 56 / 2e-07 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10016684 [exp] 55 / 5e-07 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10009790 [exp] 54 / 7e-07 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009476 [exp] 54 / 8e-07 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038071 [exp] 54 / 1e-06 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031861 [exp] 52 / 2e-06 AT2G30105 437 / 7e-154 unknown protein Lus10035976 [exp] 52 / 3e-06 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10038381 [exp] 52 / 3e-06 AT4G20270 457 / 5e-152 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.004G018700.1 pacid=42796266 polypeptide=Potri.004G018700.1.p locus=Potri.004G018700 ID=Potri.004G018700.1.v4.1 annot-version=v4.1 ATGTTTAGCTGGAAACGTCCATCAGAGGTCCTCCGCTTAACACTAAACTACGGAACCGAAGATTTCGGTGAGGAACTCAACCGTTCCTCCACATCATCCT CCACCGTCTCCTCCTCCTCTTCCACCACATTAACGCCTTCATCTTCGCCGCAGGAGATTGCGACGGAGGTCGCTGTGGAGGATGAGGAGCAGGTAGGGTT TAGAATTGAATTGGATTGGAATGCAGTGGATGATGAGGATCAGGTGGCGTTGAGGTTACAGTCGCAGTTGATGGTTGCGTTGCCTGCGCCGCAGGATTGT GTGACGGTGGATTTGAAGGCAGCGGAGGAGGAGGAGGGAAGAGTGGAGGTGGAGATGAAGGTGGAGAAGAAGAGAGAGGAATTGAGAGGGGTGCTTTTAG GTAAGAGTGGATCAGGTCAACAGAGTGATGGAGTTGGTGTATTGACTCGGTTGTTTAGATCTGATGGTGGTCGCCATTGGAAGACAGTTACTTTGCTCAG TCTTTCCGGTTGTGGATTGTTGACATTGCCTGCTGTGATAATTCAATTGCCGAATCTTGAGAAGCTTTATCTTGATAATAATAGGCTTTCAGTTTTGCCA CCCGAGCTTGGTGAGCTGAAGAATTTGAAAATTCTTGCTGTTGATTACAACATGCTGGTTTCAGTTCCTGTAGAACTGGGGCAATGTGTTGAACTGGTGG AATTGTCTTTGGAACACAACAAGCTTGTCCGGCCTCTTCTTGATTTCAGGGCTATGGCTGAGTTACAAATTCTCAGGCTATTTGGTAACCCTCTGGAATT CCTTCCTGAAATTTTACCTCTACACAAACTACGACATCTGTCCCTTGCTAATATCAGGATTGAGGCTGATGAAAGTTTGAGATTAGTGAATGTTCAGATA GAGACAGAGAACAGTTCTTATTTTGGTGCATCTAGACACCGGCTTAGTGCCTTCTTCTCTCTCATATTTAGATTTTCTTCTTGTCATCATCCTTTGCTGG CATCTACACTGGCAAAGATAATGCAAGACCAAGGAAACCGTGCAGTTGTTGGGAAAGATCTGAATGCAGTGAGGCAGCTTATTAGTATGATGAGTAGTGA CAACTGTCATGTGGTTAAACAAGCATGCTCTGCTCTATCCGATCTTGCTGCAGATGTTTCCATGGCAATGCAGTTGATGAAATGTGACATATTGCAACCC ATTGAAACGGTACTGAAATCAGTTGCCCAGGAAGAAGTAATTTCTGTGTTGCAAGTTGTGGCAACCTTGGCATTTTCATCTGACACTGTATCTCAGAAGA TGTTGACTAGGGATATGTTGAGATCATTAAAATTGTTATGTGCTCATAAAAATCCTGAGGTGCAAAGGTTAGCTTTATTAGCAGTTGGAAATTTGGCCTT CTGCTTGGAAAATCGATGTCTTCTGGTCACCTCTGAAAGTCTGCAGGACCTTCTGCTGCACATGACGGTTTCATCTGAACCACGTGTGAATAAAGCAGCT GCTCGTGCTTTAGCAATTCTTGGAGAAAATGAAAATTTAAGGCGTGCCATAAGAGGGCGACCAGTTGCAAAGCAAGGACTGCGTATACTTTCAATGGATG GAGGTGGAATGAAAGGTCTGGCAACTGTGCGGATTCTTAAAGCAATTGAGAAGGGAACTGGAAAGCGAATACATGAGTTGTTCGACCTAATCTGTGGGAC ATCAACTGGTGGGATGCTGGCTGTTGCTCTTGGCATTAAGCTAATGACCTTGGATCAATGTGAAGAAATATACAAAAATCTTGGGAAACTTGTCTTTGCT GAACCTGTGCCAAAGGATAATGAAGCTGCAACTTGGAGAGAGAAGTTGGATCAGCTTTACAAAAGTTCATCACAGAGTTTTAGAGTTGTGGTGCATGGAT CTAAACACAATGCAGATCAGTTCGAGAGGCTGTTGAAAGAAATGTGTGCCGATGAGGATGGAGACCTGTTAATAGAATCAGCTGTGAAAAATGTTCCCAA AGTTTTTGTTGTATCAACTTTGGTTAGTGTGTTGCCAGCTCAACCATTTGTGTTCCGCAATTATCAGTATCCTGTTGGAACACCTGAAGTGCCCTTTGCA ATTTCAGAAAGTTCAGGAGTCCACGTGCTCGGATCACCCACTACTGGAGCCCAAGTTGGTTATAAACGCAGTGCTTTTATTAGTAGTTGTAAGCATCATA TTTGGCAAGCCATAAGAGCATCATCTGCTGCTCCATACTATCTTGATGATTTCTCAGATGATATAAACCGCTGGCAAGATGGTGCTATAGTGGCAAACAA CCCTACCATATTTGCTATAAGAGAAGCACAACTTCTATGGCCCGACACCAGAATTGACTGCCTGGTGTCAATTGGGTGTGGCTCTGTTCCAACAAAGGTC CGGAAAGGTGGGTGGCGTTATTTGGATACTGGCCAAGTGTTGATTGAGAGTGCATGTTCTGTGGACAGAGTGGAGGAAGCTTTAAGTACGTTGCTACCCA TGCTTCCCAAGATACAATATTTTCGCTTTAATCCAGTTGATGAACGCTGTGGTATGGAGCTGGATGAGACTGACCCAGCTATCTGGCTTAAGTTGGAAGC TGCAGTTGATGAATATGTCCAGAATAATTCTGAAGCCTTAAAAAATGTCTCTGAGAGTCTACTTTTTCCCTATCAACATGACGATAAATTTTCAGAGGTT ATGAAATCTCAGCAATTTTCCAAGGCGAAGGTATCAAATACAGATGAGAGTAGCCCCTCTCTAGGTTGGAGGCGTATGGTGCTGCTTGTTGAAGCTCTGC ACAGTCCTGATTCAGGAAGGGTTGTGCATCATGCTCGGGCACTTGAGTCATTTTGTACCCGCAATGCCATAAGACTATCTCTCATGCATGCCACATCTGG AATTGCAAGAACAGTGCCAACAGGAACATTCCCATCCCCATTTGCATCACCTCTAATTACTGGAAGCTTCCCCTCAAGCCCACTCCTATTCAGTCCTGAT TTCGGCTCACAGAGGATTGGCCGAATTGACATGGTCCCACCTTTAAGTTTGGATGGAGCTCAGTCTGGAAAGACAGCTTTATCACCGCCAATGTCTCCCA AACACAGACGGCTCTCTTTACCTGTTCGGTCATTGCATGAGAAACTGCAGAATTCGCCACAAGTAGGACTTGTACATTTGGCCCTTCAAAATGATTCATC AGGCTCAATATTAAGTTGGCAGAATGATGTGTTTGTCGTTGCTGAACCTGGAGATCTTGCTGATAAGTTTCTGCAAAGTGTTAAATTTAGTTTGTTGTCG ATGAACCGAAGCCGCCATAGGAAGATTGCGTCACTTCTTGCTAATATTTCAACTGTTGCTGATTTAGTTCATTGTAAACCATACTTCCAAGTTGGAAATG TCATCCATCGTTATATAGGACGACAGACACAAGTCATGGAGGATGACCAAGAAATTGGGGCATATATGTTTCGCAGAACAGTTCCTTCTATGCACTTGAC ACCTGAAGATGTTCGCTGGATGGTTGGAGCTTGGAGGGACAGGATTATAATTTGCACAGGGACATATGGGCCTACACAAACTTTAATCAAGGCCTTTCTG GATTCTGGTGCGAAAGCTGTTGTATGCCCTTCAGCAGAGCCCTTAGAAATGCCAGTGACATTAGTCCATGGATCAGGGGAATTCAATGTTCTAGAAAATG GGAGGTTTGAGATTGGAGAGGAAGAGGCAGAGGAGGAAGAGGAAGAGGCTGAGCCTACCAGTCCAGTGAGTGATTGGGAAGATAGTGATGCTGAGAAGCA TGGCGACCGTTCTATTGGATTTTGGGATGATGATGAAGAGGACCTATCCCAGTTTATCTGTAAGTTGTATGATTCATTGTTTCAGGAAGGGGCAAGAGTA GATGCTGCTCTCCAAAATGCTCTCGCTTCCCATCGGAGGCAAAGGTATTCGTGTCATCTTCCCGGTATACAATAG
AA sequence Show only first row Show all	>Potri.004G018700.1 pacid=42796266 polypeptide=Potri.004G018700.1.p locus=Potri.004G018700 ID=Potri.004G018700.1.v4.1 annot-version=v4.1 MFSWKRPSEVLRLTLNYGTEDFGEELNRSSTSSSTVSSSSSTTLTPSSSPQEIATEVAVEDEEQVGFRIELDWNAVDDEDQVALRLQSQLMVALPAPQDC VTVDLKAAEEEEGRVEVEMKVEKKREELRGVLLGKSGSGQQSDGVGVLTRLFRSDGGRHWKTVTLLSLSGCGLLTLPAVIIQLPNLEKLYLDNNRLSVLP PELGELKNLKILAVDYNMLVSVPVELGQCVELVELSLEHNKLVRPLLDFRAMAELQILRLFGNPLEFLPEILPLHKLRHLSLANIRIEADESLRLVNVQI ETENSSYFGASRHRLSAFFSLIFRFSSCHHPLLASTLAKIMQDQGNRAVVGKDLNAVRQLISMMSSDNCHVVKQACSALSDLAADVSMAMQLMKCDILQP IETVLKSVAQEEVISVLQVVATLAFSSDTVSQKMLTRDMLRSLKLLCAHKNPEVQRLALLAVGNLAFCLENRCLLVTSESLQDLLLHMTVSSEPRVNKAA ARALAILGENENLRRAIRGRPVAKQGLRILSMDGGGMKGLATVRILKAIEKGTGKRIHELFDLICGTSTGGMLAVALGIKLMTLDQCEEIYKNLGKLVFA EPVPKDNEAATWREKLDQLYKSSSQSFRVVVHGSKHNADQFERLLKEMCADEDGDLLIESAVKNVPKVFVVSTLVSVLPAQPFVFRNYQYPVGTPEVPFA ISESSGVHVLGSPTTGAQVGYKRSAFISSCKHHIWQAIRASSAAPYYLDDFSDDINRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKV RKGGWRYLDTGQVLIESACSVDRVEEALSTLLPMLPKIQYFRFNPVDERCGMELDETDPAIWLKLEAAVDEYVQNNSEALKNVSESLLFPYQHDDKFSEV MKSQQFSKAKVSNTDESSPSLGWRRMVLLVEALHSPDSGRVVHHARALESFCTRNAIRLSLMHATSGIARTVPTGTFPSPFASPLITGSFPSSPLLFSPD FGSQRIGRIDMVPPLSLDGAQSGKTALSPPMSPKHRRLSLPVRSLHEKLQNSPQVGLVHLALQNDSSGSILSWQNDVFVVAEPGDLADKFLQSVKFSLLS MNRSRHRKIASLLANISTVADLVHCKPYFQVGNVIHRYIGRQTQVMEDDQEIGAYMFRRTVPSMHLTPEDVRWMVGAWRDRIIICTGTYGPTQTLIKAFL DSGAKAVVCPSAEPLEMPVTLVHGSGEFNVLENGRFEIGEEEAEEEEEEAEPTSPVSDWEDSDAEKHGDRSIGFWDDDEEDLSQFICKLYDSLFQEGARV DAALQNALASHRRQRYSCHLPGIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	0	1
AT1G54920			unknown protein		Potri.013G023600 [exp]	1.73	0.9140
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	2.00	0.9407
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	3.74	0.9153
AT5G46910			Transcription factor jumonji (...		Potri.001G137700 [exp]	4.47	0.8995
AT5G58100			unknown protein		Potri.006G080700 [exp]	7.54	0.8622
AT3G14172			unknown protein		Potri.003G070400 [exp]	9.48	0.8941
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	9.59	0.9118	Pt-DH1.2
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	11.48	0.8903
AT2G27900			unknown protein		Potri.001G212600 [exp]	13.19	0.8975
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	13.22	0.8974

Compare expression of checked genes

Potri.004G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.