Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11600 645 / 0 CYP77B1 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) AT5G04660 409 / 2e-138 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT3G10570 404 / 2e-136 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT5G04630 379 / 7e-127 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT3G10560 370 / 4e-123 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT1G64930 323 / 5e-105 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT1G64950 318 / 3e-103 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64940 318 / 7e-103 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 314 / 3e-101 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64900 294 / 8e-94 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018800 [exp] 724 / 0 AT1G11600 701 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.008G025500 [exp] 405 / 7e-137 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.007G088086 [exp] 316 / 3e-102 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.005G079600 [exp] 315 / 6e-102 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 313 / 5e-101 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088018 [exp] 311 / 3e-100 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088154 [exp] 308 / 3e-99 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.003G104600 [exp] 305 / 6e-98 AT1G64940 455 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 290 / 6e-92 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018351 [exp] 771 / 0 AT1G11600 662 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007658 [exp] 771 / 0 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007659 [exp] 746 / 0 AT1G11600 639 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10018350 [exp] 739 / 0 AT1G11600 637 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10007660 [exp] 674 / 0 AT1G11600 706 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Lus10034156 [exp] 409 / 5e-138 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Lus10020360 [exp] 312 / 1e-100 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 304 / 2e-97 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 300 / 5e-96 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 296 / 6e-94 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G019000.1 pacid=42796473 polypeptide=Potri.004G019000.1.p locus=Potri.004G019000 ID=Potri.004G019000.1.v4.1 annot-version=v4.1 ATGGAGTTGATAGATCTTCTTATTCTTGGTCTAACACTCTTTTTTCTTGCTATATGGTGGCGGAGCTTCTCTGTCGTCAATGGCGGCGGAGCCAAGAACT TGCCACCAGGACCACCAGGTTGGCCTCTTGTGGGCAACTTGTTTCAAATAATACTTGAACGGCGTCATTTCATCTTTGTCATACGTGATTTACGTAAGAA ATACGGTCCAATCTTCTCCATGCAAATGGGCCAAAGTACTCTTGTTATAGTCACTAGCCCTGACCTAATCCATGAAGCCCTTGTTCAAAAAGGCCCTATC TTTGCTAGTCGGCCACCGGACTCACCGATCCGGTTGGTGTTCAGTGTCGGGAAATGTGCCGTCAACTCAGCTGAATATGGACCTCTTTGGCGGACACTTC GTCGGAACTTTGTCACGGAGTTGATAAGCCCGGTCAGGATCAGACAGTGTAGTTGGATACGAGAATGGGCGTTGGAGAGTCACATGAAGAGGCTCAAAAG TGAAGCTTTAGAAAACGGGTACGTAGATGTAATGGATGTTTGTAGATTCACTGTCTGTAGCATTCTAGTATTTATTTGCTTCGGAGCAAAAATCTCAGAA CATTGGATTCATGATATAGATAATGTGACTAAAGATGTCATGCTAATATCAATTCCACAGCTTCCCGATTTCTTGCCTATTCTAACTCCCTTGTTTCGCA AGCAAATGAAGAGGGCAAAGGATTTAAGAAAGACTCAAATTGAGTGCTTGGTTCCTTTGATAAGGAACAGAAGAGCATTTGTAGAGAAAGGTGAAAACCC GAAAATGGAAATGTTGAGTCCAGTTGGTGCAGCCTATGTTGATTCACTTTTTACCCTTAAGGCACCGGGGAGGGGTCTTTTAGGAGAAGAAGAGCTTGTT ACAGTTTGTTCAGAGTTGTTTGTTGCTGGAATCGATACTAGCACAAGTGTGCTACAGTGGGTTTTTCTTGAATTGGTCCTTAACCAAGACATTCAAGAAA AGTTGTACCGAGAAATTGTTGAGTCTGTGGGCAAAGATGGAGTAATCAACGAAGAAGATGTGGAGAAAATGAACTATCTCAACGCAGTGGTTAAAGAAAC CCTAAGGGTACATTCTCCGGCGCATTTCACGTTATCACACGCCACGACGGAGGAGACGGAGCTTGGTGGCTACAAGATTCCGAGCAATGTGAATGTTGAG TTCTACATTGAATGGATGACTGAGGATCCGAGTTTGTGGAAGGATCCGGGTATATTTCGGCCCGAGAGGTTCATAGATGGTGATGGTGTCAACGTAGACA TGACCGGAACGAAGGGCAAGGTGAAGATGTTGCCGTTCGGAGCCGGGAGGAGGACTTGCCCAGGGTTGGCTCTTGGTTTGTTGCATGTGAATTTAATGCT TGCAAGAATGGTACAAGCTTTCAAGTGGCTACCCGCACCGAATGCTCCACCCGACCCGACAGAGGCCTTTGCTTTCACGGTTGTCATGAAGAACCCTCTA AAAGCAGTCATATTGCCCAGGTGA
AA sequence Show only first row Show all	>Potri.004G019000.1 pacid=42796473 polypeptide=Potri.004G019000.1.p locus=Potri.004G019000 ID=Potri.004G019000.1.v4.1 annot-version=v4.1 MELIDLLILGLTLFFLAIWWRSFSVVNGGGAKNLPPGPPGWPLVGNLFQIILERRHFIFVIRDLRKKYGPIFSMQMGQSTLVIVTSPDLIHEALVQKGPI FASRPPDSPIRLVFSVGKCAVNSAEYGPLWRTLRRNFVTELISPVRIRQCSWIREWALESHMKRLKSEALENGYVDVMDVCRFTVCSILVFICFGAKISE HWIHDIDNVTKDVMLISIPQLPDFLPILTPLFRKQMKRAKDLRKTQIECLVPLIRNRRAFVEKGENPKMEMLSPVGAAYVDSLFTLKAPGRGLLGEEELV TVCSELFVAGIDTSTSVLQWVFLELVLNQDIQEKLYREIVESVGKDGVINEEDVEKMNYLNAVVKETLRVHSPAHFTLSHATTEETELGGYKIPSNVNVE FYIEWMTEDPSLWKDPGIFRPERFIDGDGVNVDMTGTKGKVKMLPFGAGRRTCPGLALGLLHVNLMLARMVQAFKWLPAPNAPPDPTEAFAFTVVMKNPL KAVILPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Potri.004G019000 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Potri.012G143600 [exp]	1.00	0.9993
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	2.00	0.9989
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	3.46	0.9981
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	3.74	0.9958
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	3.74	0.9980
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	5.47	0.9967
					Potri.006G027800 [exp]	5.65	0.9978
AT1G07080			Thioredoxin superfamily protei...		Potri.016G122000 [exp]	9.48	0.9954
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024800 [exp]	9.94	0.9970
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	10.09	0.9950	CPRD49.1

Compare expression of checked genes

Potri.004G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.