Plant FIBer expression Database

Potri.004G019100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21770 657 / 0 Pseudouridine synthase family protein (.1)
AT3G19440 54 / 2e-07 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007657
[exp]
654 / 0 AT4G21770 634 / 0.0 Pseudouridine synthase family protein (.1)
Lus10018352
[exp]
449 / 4e-157 AT4G21770 446 / 5e-156 Pseudouridine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence
>Potri.004G019100.5 pacid=42795745 polypeptide=Potri.004G019100.5.p locus=Potri.004G019100 ID=Potri.004G019100.5.v4.1 annot-version=v4.1
ATGGCTTCTCTGAATTTAGCTTCAATCTTTAGCTATAGTTACAGGAGTTTTAGTGCACCAGTGACCCTCCTGCGCACGCTAGCATTCACCAGGGCTTATT
CTCTCAACAAGAAGGCTTTGGTTTGGTGTTCTCTGAGTAAAAAGAAGTTAAGCTGTGAATCATTGAAGCAAGATATTGCTTGCACAACTGCCACTTCTTC
TGTTAATGGTTACCCGGAATATACTCGCTTGCTTCCGTGCCCCTCTCACAATAGCCCACCAAGAATTGAACACTTGGTTGTTTCAGAAGAAGGTCCTGTT
CTAGACTATATCTGTAAAGCTCTGGATCTTCCTCCTCTGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTACATTATGCCCTTGTATGCCCACAGCCAC
CTCCAACAGCAACTCCTGAGCAGATTAGGGTATTTGAAGAAGTTACAGCACCATCAGTTCTAAAGAAGAGAGCTTCTATCAAAGGGAAAACAGTACGAGA
AGCACAGAAAACTTTCCGGATAACCCATGTCGATCAGTTTCTTGAAGCTGGAATGTATTTGCGTGTTCATGTACACCCAAAACGCTTCCCTAGGTGCTAT
GACATTGATTGGAAATCAAGAATTATACATGTGACTGAATCTTTTGTTGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGAACTACAGACAACATAG
AAGAAAGTTGTGCCACCTTTGCGACTCGTGCGTTGGGATTGACAGCCCCATTAAGGACTACCCATCAGATTGATAACTGCACAGAAGGCTGTGTTGTGTT
AGCCAGGACCAGAGAGGACTGCTCAGTTTTCCATGGAAAAATCAGAGAGAAAACGGTGAAGAAACTTTATATTGCACTTGCTGCATCTCCCGTGCCCATT
GGTGTAGTTAACCACTACATGCGTCCTATTAATATGGCTCCGAGACTTGTTTCAGAAGAATTTATAAAAGGTTGGCATTTATGTCAACTTGAGGTCATGG
AATGCAAGAGAGTTCCTTGGCCAGATGCTGTTATGGAAGAGAAATATTGTGTTCAAGACTGTGGGTGGCCCTCAAAGGATCATGCATATGAGTGTAAAAT
CAACCTTTTGACTGGCCGTACACATCAGATACGAGCTCAACTGGCTGCCCTCGGTGCACCTCTGGTGGGTGACTCAATGTACATGCCAGCTGCAGTTGCA
GAAATGGTCAGTCCGGGTTGTAATCCATTTGGAAAATACAAAAAGCAATACACTAGTGAGGATGATAAAGCAATAGCTGTTGAAGAGTGGGTTTTATGTC
ACGGAAAGGAACCAAACGTTGCAATTGGTCTTCAGGCATGCCAGATTTCATGGGATGATGGCAAGCACATTTACAATGCTGGATCTCCCTGGTGGAGATG
CAGAATGGCTTAA
AA sequence
>Potri.004G019100.5 pacid=42795745 polypeptide=Potri.004G019100.5.p locus=Potri.004G019100 ID=Potri.004G019100.5.v4.1 annot-version=v4.1
MASLNLASIFSYSYRSFSAPVTLLRTLAFTRAYSLNKKALVWCSLSKKKLSCESLKQDIACTTATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPV
LDYICKALDLPPLFVADLIHFGAVHYALVCPQPPPTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAGMYLRVHVHPKRFPRCY
DIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPI
GVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVA
EMVSPGCNPFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWRCRMA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21770 Pseudouridine synthase family ... Potri.004G019100
[exp]
0 1
AT5G08740 NDC1 NAD(P)H dehydrogenase C1 (.1) Potri.007G098700
[exp]
1.73 0.9413
AT1G73530 RNA-binding (RRM/RBD/RNP motif... Potri.012G038200
[exp]
8.66 0.9107
AT3G13490 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS ... Potri.003G221600
[exp]
9.59 0.9109
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
10.39 0.8908 Pt-DEGP2.2
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Potri.016G036200
[exp]
10.95 0.9313
AT4G09730 RH39 RH39 (.1) Potri.005G198300
[exp]
19.18 0.8921
AT4G15110 CYP97B3 "cytochrome P450, family 97, s... Potri.006G006200
[exp]
21.54 0.8649
AT3G51430 SSL5, YLS2 YELLOW-LEAF-SPECIFIC GENE 2, S... Potri.006G140500
[exp]
26.07 0.8897
AT5G61490 Uncharacterised conserved prot... Potri.014G057200
[exp]
31.36 0.8986
AT2G22650 FAD-dependent oxidoreductase f... Potri.018G112600
[exp]
34.20 0.8921

Potri.004G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.