Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 637 / 0 BGLU46 beta glucosidase 46 (.1.3) AT4G21760 625 / 0 BGLU47 beta-glucosidase 47 (.1) AT1G61810 602 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT3G18080 454 / 1e-155 BGLU44 B-S glucosidase 44 (.1) AT1G26560 451 / 1e-154 BGLU40 beta glucosidase 40 (.1) AT3G18070 448 / 1e-153 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 444 / 8e-152 BGLU17 beta glucosidase 17 (.1.2) AT5G36890 439 / 3e-150 BGLU42 beta glucosidase 42 (.1.2) AT5G54570 430 / 6e-146 BGLU41 beta glucosidase 41 (.1) AT5G44640 426 / 4e-145 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019366 [exp] 845 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 809 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019700 [exp] 803 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 721 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G403900 [exp] 535 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.008G094200 [exp] 467 / 4e-161 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G015100 [exp] 467 / 7e-161 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 464 / 7e-160 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 461 / 1e-158 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007656 [exp] 722 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 711 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 662 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 547 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018354 [exp] 478 / 8e-166 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10009644 [exp] 464 / 2e-159 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031234 [exp] 462 / 6e-159 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 461 / 3e-158 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 457 / 5e-157 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10004654 [exp] 457 / 7e-157 AT1G26560 773 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.004G019300.1 pacid=42796594 polypeptide=Potri.004G019233.1.p locus=Potri.004G019300 ID=Potri.004G019300.1.v4.1 annot-version=v4.1 ATGAGAGACTCCAAAGGAAGGGCATTACTCATCAGGGAGCTTCCTTCAAATTTTCAAGTTATGTTTCTTTTAGTCCTTATCTTCGTTCCTCTCTGTGTAT CATCACATCCAGAAACTTTGCAAGAGAGTTTAGATCATTTTTCATTGCCAGACAACTTTCTCTTCGGCATGGCCTCCTCTTCTTATCAGTTTGAAGGTTC TTATCTTAGTGATGGTAAAGGTTTGAGCAACTGGGATATGCATACCCACACACCAGGAAAAATAATTGATGGAAGCAATGGAGATATAGCTGCGGACCAG TACCATCTCTATCCGGAAGACATCGATTTAATGGACTCCCTTGGAGTCAGCAGCTATAGGTTCTCGATTTCATGGGCACGAATTCTACCCAGAGGGAGAT TCGGAGATATCAACAAGGCTGGTATTAGCTACTATAACAAGCTCATCGATTCTCTCCTGCTTAAAGGAATCCAACCATTTGTGACATTAGTTCATTATGA TATACCTGAAGAACTGGAGGAGAGATATGGTGGATGGCTAAGTCCTCGATGCCAGGAGGATTTTGGATATTATGCAGATATTTGTTTCAAGAATTTCGGA GATCGAGTGAAGTACTGGACCACCTTCAATGAGCCAAATATACAAACTATTAAATCCTACCGATCAGGTGAATACCCACCATGTCACTGCTCCAGCCCTT TCGGAAATTGCACTCATGGGGATTCAGAGAAGGAGCCCTTTATTGCAGCACATAATATGATTTTAGCACATGCAACAGCAGTTGATGTTTACCGAACTAA ATACCAGAAAGAGCAAGGAGGCAACATTGGAATTGTCTTAGATTGCATTTGGTTTGAACAAATAAGCAATTCCACAGCAGACAAGTTAGCCGCTGACAGA GCTCAAGACTTCTTCCTGAACTGGTTCTTGGACCCCATCATATTTGGAAATTATCCCGCAGAAATGTCTAAAATTCTAGGGTCTACTTTACCGAAATTTT CAAGTAATGACAAAGAGAAACTGAAGAACGGACTGGATTTCATTGGCATCAATCATTACACCAGTGAATACGTCCAAGACTGCATCTTCTCCGTTTGTGA ACCCGGAACAGGAGCCTCCAGGACAGAAGGGCTTGCCCGGAGAAGCCAAGAAAAAGATGGAGTTCCCATCGGCATACCTACTGATGTGGACTGGCTGCAT TTTTATCCACAAGGAATGGAGAAGATGGTTACCTATATAAAGAAGAGATACAATAACAAACCAATGATCATTACAGAGAATGGGTATGGCCAGCAGAACA ATCCAAACCTCACTATTGTTTGTCATGATATAGAAAGGGTTGAGTTTATGTCTAACTACTGGGATTCCTTGTTGACAGCAATGGAGAAAGGAGCAGATGT GAGGGGCTATTTTGCCTGGTCGTTGCTTGATAATTTTGAGTGGACATATGGTTATACACAAAGATACGGACTTTACCATGTTGATTTCACTACACTGAAG AGAACTCCAAAATTATCAGCTGCTTGGTTCAAGGAATTTATAGCAAGGTATAAGGTAGACAAATCACAAATGTGA
AA sequence Show only first row Show all	>Potri.004G019300.1 pacid=42796594 polypeptide=Potri.004G019233.1.p locus=Potri.004G019300 ID=Potri.004G019300.1.v4.1 annot-version=v4.1 MRDSKGRALLIRELPSNFQVMFLLVLIFVPLCVSSHPETLQESLDHFSLPDNFLFGMASSSYQFEGSYLSDGKGLSNWDMHTHTPGKIIDGSNGDIAADQ YHLYPEDIDLMDSLGVSSYRFSISWARILPRGRFGDINKAGISYYNKLIDSLLLKGIQPFVTLVHYDIPEELEERYGGWLSPRCQEDFGYYADICFKNFG DRVKYWTTFNEPNIQTIKSYRSGEYPPCHCSSPFGNCTHGDSEKEPFIAAHNMILAHATAVDVYRTKYQKEQGGNIGIVLDCIWFEQISNSTADKLAADR AQDFFLNWFLDPIIFGNYPAEMSKILGSTLPKFSSNDKEKLKNGLDFIGINHYTSEYVQDCIFSVCEPGTGASRTEGLARRSQEKDGVPIGIPTDVDWLH FYPQGMEKMVTYIKKRYNNKPMIITENGYGQQNNPNLTIVCHDIERVEFMSNYWDSLLTAMEKGADVRGYFAWSLLDNFEWTYGYTQRYGLYHVDFTTLK RTPKLSAAWFKEFIARYKVDKSQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019300 [exp]	0	1
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	5.91	0.8351
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.018G058800 [exp]	17.02	0.8610
AT5G63380			AMP-dependent synthetase and l...		Potri.012G095000 [exp]	19.07	0.8223
					Potri.001G427210 [exp]	19.20	0.8324
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.005G068900 [exp]	24.12	0.8367	AAP1.1
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	33.48	0.8173
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.013G131000 [exp]	44.83	0.8197
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	46.18	0.7862
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	48.20	0.7663
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113000 [exp]	53.99	0.7975

Compare expression of checked genes

Potri.004G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.